Gene detail

Gene detail information of Glyur001955s00042262

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G17020.1	7.00E-115	senescence-related gene 1
NR	XP_004490337.1	0	PREDICTED: protein SRG1-like [Cicer arietinum]
COG	YP_003209425.1	7.00E-31	hypothetical protein CTU_10620 [Cronobacter turicensis z3032]
Swissprot	tr\|Q39224\|SRG1_ARATH	9.00E-142	Protein SRG1
trEMBL	tr\|A0A072TK12\|A0A072TK12_MEDTR	0	Flavonol synthase/flavanone 3-hydroxylase {ECO:0000313\|EMBL:KEH17521.1}

Sequence

Transcript Sequence

>Glyur001955s00042262.1
AACGCAGACATCGAAGAAACGTGATTTATCTTTCTTTTTACTTGATCAACAACCTCCTCATTTTCCCCAGTCATACTTNAATAGTCTCCATTCAAGCGTTTCACTCCCTTTATAAGTGCGATCTCAAATCATCTTCGAAGCAATAGATCTTAATCTTAGGCTTTAGCAGAGAAGCAAGTTGTGTCCAATCCGTATTGAACCTCAGTGGGGCGTGTGGACTTGAAATCAAAATCAACCCAAGCAAGAAAATGTCCAAGATTGGAACCTCTTTATTGGTGCCTTCTGTTCAGGAGCTTGCAAAGCAACCCATCACCAAAGTTCCAGAGCAATATCTTCGACCAAGTGATCAAGATCCTATTATTGTAACGAATACAACCTCCTTACCACAAGTTCCGGTCATTGACCTAAACAAATTGGTATCTGGAGATACATCTGAGCTAGAGAATCTAGATTATGCGTGTAAGGAATGGGGTTTCTTCCAGCTAATCAACCATGAAGTCAACCCTTCATTGGTGGAAAATATGAAGATAAGTGTTCAAGAGTTTTTAAGTCTTCCAATAGAAGAGAAGAAAAACTTTTGGCAAACCCCAGAAGACATAGAGGGGTTTGGTCAATTGTTTGTTGTATCTGAGGATCAAAAGCTAGAATGGGCAGATTTATTCTTCATTACGACTCTCCCATCATATGCAAGGAATCCCCGCCTCTTTCCAAGTATTCCCCAATCATTCAGAGATCATTTAGAGAGCTATTGCTTGGAATTGGAAAAACTTTGTACCACAATCATTAAACATATGGCAAAAGCTCTTCAAATCGAACCAAATGAAATGGTAGACTTATTTGACGATATAAGTCAAGCAATGAGGTGGAATTACTACCCTCCGTGTCCCAAACCTGAAAATGTCATTGGATTAAATCCTCATTCTGATGCTGGTGCCTTAACCATCCTACTCCAAGTCAATGAAATAGAAGGCCTCCAAATAAGAAAAGATGGAGAATGGATTCCTATTCAACCCCTCTCCAATGCGTTTGTCATAAACGTTGGAGACATTTTGGAGATACTAACGAATGGAATTTACCGGAGTATCGAACATCGGGCAACAGTTAACTCAAAGAAAGAGAGGATTTCCATTGCTACATTTCACAGACCTCAAATGAGCAGAGTTATAGGTCCAACACCAAGCCTTGTTACTCCTGAAAGGCCTGCATTGTTCAAAACACTTGTTGTAGAAGATTACTACAAAGCATTCTTTTCATGCCAACTACAAGGGAAATCATGCCTTGATGCTATGAGAATCCAAAATGAAAGTAGCATATGATAAATGTTGGGACTATGCAGGTTTAAAAATAAANTATGTACTTTGAAAATAGTTATACCATATGTGGTAGCTAAGGTATAATAATGCAATAATGCTACTAAGTATGTNCAACGCTTCAAGTTGACGATATACTTGATTGCCTTAGGCGAGTTATTGGAGCATTAGCAACAAATACTTCGTTCACATGTTATAAGTGTGGTGTTATATAAATAGTTTGTGTTTTGGACTTAAGGGTCTGTTTGGATTGACTTATGCAGAGCTTATGAACACAGCTTATGACTGATTCATAAGCTGTTTTGGGCTTATTTTTCATAAGCTACCTAGGATAGCTTATCAAAATAGCTTATGGCTTATATAAAATAAATTTCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01955	25041	29749	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001955s00042262.1	PF14226.1	DIOX_N	48	151	9.40E-22
Glyur001955s00042262.1	PF03171.15	2OG-FeII_Oxy	202	300	6.60E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	21.829
SRR1783600	control	21.830
SRR1783602	moderate drought stress	15.121
SRR1811619	moderate drought stress	15.225

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.496
DRR006520	Root Summer glycyrrhizin high producing strain	1.468
DRR006521	Root Winter glycyrrhizin high producing strain	2.643
DRR006522	Root Winter glycyrrhizin high producing strain	2.585
DRR006523	Root Summer glycyrrhizin low producing strain	0.130
DRR006524	Root Summer glycyrrhizin low producing strain	0.128
DRR006525	Leaf Summer glycyrrhizin high producing strain	40.922
DRR006526	Leaf Summer glycyrrhizin high producing strain	40.413

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	43.287
SRR2868004	Drought Stress (root)	50.272
SRR2967015	Control (root)	38.563

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	23.646
SRR9715740	Leaf	21.320
SRR9715741	Leaf	34.044
SRR9715739	Root	4.496
SRR9715742	Root	12.179
SRR9715743	Root	10.496

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	18.820
SRR8749028	MeJA induced 9h	35.600
SRR8749029	MeJA induced 9h	16.924
SRR8749030	Uninduced	187.372
SRR8749031	Uninduced	135.533
SRR8749032	Uninduced	55.563

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	50.802
SRR8400027	Control - Root	41.317