Gene detail

Gene detail information of Glyur001948s00042134

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G78120.1	4.00E-112	Tetratricopeptide repeat (TPR)-like superfamily protein
NR	XP_003615062.1	0	Small glutamine-rich tetratricopeptide repeat-containing protein [Medicago truncatula]
COG	YP_004384202.1	7.00E-22	TPR-repeat-containing protein [Methanosaeta concilii GP6]
Swissprot	tr\|Q9SIN1\|TTL3_ARATH	2.00E-104	Inactive TPR repeat-containing thioredoxin TTL3
trEMBL	tr\|G7KAB8\|G7KAB8_MEDTR	0	Inactive TPR repeat thioredoxin TTL3-like protein {ECO:0000313\|EMBL:AES98020.1}

Sequence

Transcript Sequence

>Glyur001948s00042134.1
CTTTCACAATCCTCTCACATATCTTTCACCTCTTTATTTCTCCATCTAAACAACATATATATATATATAGTTTTGTCACCAGAAGAAGAAATCATTGACTTGTTGCTTTGATACACTTCTCATACCCCTAACACCTTCAGAAACACACACATCTTCAAGTTCAGAAAGCCAACTATGTCAACAAAGTCAAAGAACAAGCTGGGGAATGAACTGGGTTGTGGTCTCATGGGGAGAATTCTCCGTCTCAAAAGCCACAGGTTGAGAAACTCATTAGTTCATTCACTACCCACGAATCATGTCAAAAATGAACCACCAAAGATGTCTCCANATAAAGAACCAAAGGTTCTACCAAGAAGCTCCACCGACACTGCACTCACTGACCCACACAACAAACANAGTTCAGATCAGAGACAAACCAGAAAGAGTACCTCTATTCACGAAACACCTACAACTACACACCGAAACAATCAAAACCAGAGGCATTTTGATGCTGCTGCAGCAAGAAGCTCAACATCATCATCATCTACTGGCAGTTCAACCCACACAAAGGTTCAACAAAACCATGGCATAGGGCCAGCCCAAGGGNTTCGAATCATGGACAAAGAAGCGCCTTCTAAAGATGATGGCAAGCTACATAGAGAAAACTCTCTAGAACTTGCTAGAGTAAGCACGAGTCACCAGCACGGTAACAACNAAACCAACACCAAATCCCCAGCCAGAGACTTTTCTCCCTTGAAACTCACTGGGAACTTGCTGGTGAACAACACCCCAAGAAGAAAGAGTGTGGAATGCTTGACTAGGAATTCAGAGCTGAACTACCCTTTGCCCAGTAGTAGCAATAATGCAAGAAAAGGCGTGATGATGGGGAACATCATGAGGAAGAACAGCAATGAGCTTGCACAGTTTCTGAGCCAAACAAGGCACAACAGGGTGGACCCTGAGGTGTTGAAGTCCATGGGAAATGAAGCATACAAGAAGGGGAGATTTGAAGAGGCTTTGGCTTTGTATGACCGAGCAATTGCTGTTGATTCAAATAAGGCAACTTATCATTGCAACAAGAGTGCTGCTTTAATTGGATTAGGAAGGTTTCAGGAAGCAGTTTTTGAGTGTGAGGAATCTATCCGGTTGGATCCTTCTTATAACAGAGCCCACAACCGTTTGGCAACAATATATTTCAGATTAGGAGAAGCAGAAAAGGCACAGGATTGCAATCAGTCAACCTCTTATGCTGATTCCGTACTCGCTTTCCAAGTTCAGGCTCTTCAAAATCACCTTAACAAAAGCACTGAAGCTAGGAAAGTCAATGAATGGAGTGTTGTACTAAAGGAAACACAGTCTGCATTATCCTTGGGTGCTGATTCAGCTCCACAGATCTATGCTTTACAAACTGAAGCCTTGCTGAAGCTCGTAAGATATCAAGAGGCATATGCTGTCTACGANAAAATGCCAAAATTTTCACTTGATTGGTGTAACAAGATATTTTGCCTGGCTACTAGTGCTTACCTGTTGATGATAGGTGCACAGGTTTACTTGGCATCCGGCAGGTTCGAGGATGCTGTGACAACAGCTCAGCAAGCAGCTAGAGTTGATCCAGGCAACAGAGAGGTGAATGCGATGTTAAGGAGAGCCAGAGCAGCAACATCAGCTAGAATGAGTGGAAACTTGCTCTTCAAGGCGTCAAAATTCATGGAAGCNTGTGCCGTATACAATGAAGGACTAGAGCATGATCCACACAACTCAGTTCTGNTTTGCAACAGAGCAGCATGTCGTTCTAAGCTAGGCCAATATGAAAAAGCAATTGAAGATTGTGATGCAGCACTTATGGTTCAGCCATGTTATAGCAAAGCTAGGCTAAGGAGGGCAGATTGCAATGCCAAGTTGGAACGATGGGAAGCTGCCATTCAAGACTATGAAATGCTGATAAGAGAAAAGCCAGGGGATGAGGAAGTGGCCAGGGCTTTGTTTGAGGCTCAGCTCCAACTCAAGATGCTACGTGGTGAAGATATTAAGGACTTGAAATTTGGTTCAAATTTAGTTTTGATCTCAAGTAATGATCGGTTCAGACATTATGTAACCTCACCTGGTAAGGCACATTTGGCTACTTCTCTTGTACANTGACATATGAGCATTACAAACAAATACACTAACGAGTAGAAAGGGTTATTTTATAGGGATGGCTGTTGTGCTCTTCAGCAACAAAGCAACCCACAAGCAAGTGTTGCTNGTGTTGGAGCAAACCAGCAAGAGATTCCCATCAGTTAATTTCCTCAAGGTGGAGATCGAAGACCACCCCTACTTAGCCAAATCNGAAGGTGTGAGCTCTATTCCAGCCTTCAAAATATACAAGAATGGATCAAGGGTTAAAGAAATCTCAGGGAACAACCACGAGTTGTTAGAAAGATCAGTTAAATTGTATAGCAGCTGAGATAATAGCACCTCTTAAAATGGAACACTTTGTGCAGGAATAAGGGGAAAAAAAGAATGTCAGATTTTTCATAATAGAAGAGAAAAGGGGAAAATGTCCAAAATAATTCAAGCTAATTGCTTCTCCTNCAAAGATTTACTGCCTTGCTTATAAGGTAGAGGAAACCCCAGAGGGAGCNTAGTGTCACTGTAGTACACAGAGAAGTGATCTATAGGAAAAGGAATATTCTTTGTGTTTNGTAATAGATTCTTTTAATCCATTGAATGTTTGAGCAGCCTTCAATTATTCATATCCCATATTCCATGTATATTGGTTTGACAAACCTAAAAACATATTTAAACATTTATTCTTTGAGTTTTTTTTTTCATAGGTTGTCCCTATGAACTACTAGTTGTAGTAATATGGTAGAAGGAACACAACTGCATACGATGGAGAAANTTTGTTGAATATTAGTGATGGGCCTAAGAGAGTTTCTATCCTTTCAATTTGGATGTTCTGGCTTACAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01948	32862	38057	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001948s00042134.1	PF13414.1	TPR_11	255	320	5.70E-17
Glyur001948s00042134.1	PF07719.12	TPR_2	449	475	0.07
Glyur001948s00042134.1	PF13414.1	TPR_11	488	553	9.30E-15
Glyur001948s00042134.1	PF00515.23	TPR_1	557	587	0.055

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.559
SRR1783600	control	3.700
SRR1783602	moderate drought stress	3.580
SRR1811619	moderate drought stress	3.621

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.254
DRR006520	Root Summer glycyrrhizin high producing strain	10.942
DRR006521	Root Winter glycyrrhizin high producing strain	0.799
DRR006522	Root Winter glycyrrhizin high producing strain	0.739
DRR006523	Root Summer glycyrrhizin low producing strain	16.764
DRR006524	Root Summer glycyrrhizin low producing strain	16.583
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.601
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.567

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.642
SRR2868004	Drought Stress (root)	13.369
SRR2967015	Control (root)	10.844

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.835
SRR9715740	Leaf	0.716
SRR9715741	Leaf	0.890
SRR9715739	Root	0.650
SRR9715742	Root	14.046
SRR9715743	Root	11.742

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.465
SRR8749028	MeJA induced 9h	43.245
SRR8749029	MeJA induced 9h	74.887
SRR8749030	Uninduced	5.868
SRR8749031	Uninduced	8.565
SRR8749032	Uninduced	12.467

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.304
SRR8400027	Control - Root	12.092