Gene detail

Gene detail information of Glyur001947s00035933

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G80510.1	1.00E-154	Transmembrane amino acid transporter family protein
NR	XP_004486639.1	0	PREDICTED: sodium-coupled neutral amino acid transporter 4-like [Cicer arietinum]
Swissprot	tr\|O22719\|LHTL3_ARATH	4.00E-13	Lysine histidine transporter-like 3
trEMBL	tr\|G7IIA0\|G7IIA0_MEDTR	0	Transmembrane amino acid transporter family protein {ECO:0000313\|EMBL:AES68187.2}

Sequence

Transcript Sequence

>Glyur001947s00035933.1
ATGTCTCATAGAAAGGAGGGTAATTATACTTCAATACCCGTTAGCTCATACCTAGAATTGCAACCCCAAACTGAATCCCCAAACTCATTACAAAGATTGTCTTTTGATGAAACTGGGAATGGTGGGTATTTGGGATCCAAGGTTGTCGATGAAGATGACGATGATGATTTAGAAATTGACATCGATAATTACCCTCTTGTTGTTGTTGGGTCCAATAACGGTGGTGCTGGGGTACCTGGTGCAGTGTTCAATTTGACCACAACAATTATTGGTGCAGGGATCATGGCACTCCCTGCAACAATGAAGGTTCTTGGAGTTTTTTTGGGGATTTTGTTGATTATTTTAGTGGGGATTTTGTCAGAGATTAGTGTTGAATTGTTAGTGCGGTTTTCTGTTTTGTGTAAAGCAACCTCATATGGTGAGGTTGTTCAACATGCCATGGGAAGGCCTGCAAGGATTGTGTCTGAGATTTGTATCATCGTGAACAATGCTGGTATGTTGGTGGTTTACTTGATCATTATGGGGGATGTTATGTCTGGTTCTGTTCATCACTTGGGGGTTTTTGATCAGTTATTGGGGAATGGGGTTTGGGATCAGAGGAAGCTTGTGGTTCTTGTTGTCATGGTGGTGTTTCTGGCACCACTTTGTTCACTTGACAAGATTGATTCGTTGAGCTTGACTTCGGCTGCCTCGGTCGCTCTTGCCATCATGTTTGTTGTCGTTGCTTTCTTTGTCGCTTTCATTAAGCTCGTCGAGGGGAAGATCGATGCTCCCAGGATGGTTCCCGATTTTAGCTCAAAGAAGGCCATCTTGGATTTGCTTGTGGTGATTCCAATCATGACCAATGCATTTGTTTGTCATTTCAATGTGCAGCCGATATACAATGAACTCGAAGGGCGGTCTCCTCAGAAGATGAACCGGGTTGGAAGGATCACCACAGTTCTGTGCATCCTGGTCTATGCCGCGACCGCGCTGTCCGGTTACCTATTGTTTGGGGATGATACTGAGTCTGATGTGCTGACTAATTTCGATAAGGATCTTGGAGTTCGCTTTAGCTCGGCCTTGAACTATATTGTCCGGGTCGGCTACATTCTCCATTTGATACTTGTCTTCCCTGTTATTCATTTCTCGCTACGCCAAACAGTGGATGCATTGGTGTTTGAGGGATCACCTCCCCTATCGGAAAGTAGGAAGAGATCACTGGGGCTGACTCTGGTTCTGTTGATCCTCATATATATTGGTTGTACCATGATTCCAAACATTTGGACAGCTTTTAAGTTCACTGGGGCAACCACAGCTGTTTCATTGGGATTCATATTCCCATCTCTTGTTTCAATAAGATTAAGTCATAAGTGGGATCTGAGCCTTGGAGAATGGATTTTGTCATGGTTGATGTTGGTGTTGGCTGTGACTGTTAGCATAGTAGGAGTCATTGGCAATGTCTATAGCCTCCAGAGTAAGTCTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01947	2525	3991	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001947s00035933.1	PF01490.13	Aa_trans	77	479	4.30E-63

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.260
SRR1783600	control	5.243
SRR1783602	moderate drought stress	3.009
SRR1811619	moderate drought stress	2.966

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.861
DRR006520	Root Summer glycyrrhizin high producing strain	13.037
DRR006521	Root Winter glycyrrhizin high producing strain	7.531
DRR006522	Root Winter glycyrrhizin high producing strain	7.292
DRR006523	Root Summer glycyrrhizin low producing strain	17.155
DRR006524	Root Summer glycyrrhizin low producing strain	17.008
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.088
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.037

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.172
SRR2868004	Drought Stress (root)	25.573
SRR2967015	Control (root)	25.099

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.682
SRR9715740	Leaf	14.928
SRR9715741	Leaf	21.206
SRR9715739	Root	24.389
SRR9715742	Root	34.430
SRR9715743	Root	29.794

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.511
SRR8749028	MeJA induced 9h	14.373
SRR8749029	MeJA induced 9h	14.670
SRR8749030	Uninduced	17.112
SRR8749031	Uninduced	17.796
SRR8749032	Uninduced	19.441

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.910
SRR8400027	Control - Root	14.872