Gene detail

Gene detail information of Glyur001946s00034915

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G26480.1	1.00E-114	general regulatory factor 12
NR	XP_004490160.1	1.07E-159	PREDICTED: 14-3-3-like protein GF14 iota-like [Cicer arietinum]
Swissprot	tr\|Q9C5W6\|14312_ARATH	6.00E-147	14-3-3-like protein GF14 iota
trEMBL	tr\|E9KNA5\|E9KNA5_SOYBN	2.00E-159	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G12930.1}

Sequence

Transcript Sequence

>Glyur001946s00034915.1
CCCTCCCACATTAAATTTGCATATTGTTACAGATAAGCAAGCANTGTTCTCTCTCTCTCTCTATTTCCCCATCACGATTTGCGCGCTTCCTCTTTCAAACAATCGGATCCAACGGTCCAGATTTCGGTCTTCCTTTGACCCCTGCAACATGCTCGATCTTTAGCCACTATATAACCACTCCACCTCTCTCTTCCTTCTTCCCCGCACCATCCCCATTCTATTGTTGTTCTTCTTCTTCGCCCCTCTGTGCTTTGTTTTTGTTGTTGTTGTTCTCGTTGCTTTGTGATCTCTCTCTGAAACAATGTCCGCTTCAGAAAGAGAGAGAGACCCAGGTTTACTTGGCCAAGCTTGCTGAGCAAGCCGAGAGATATGAAGAAATGGTTGAATGTATGAAGAAAGTGGCAAAACTTGATCTTGACCTAACTGTGGAAGAGAGGAACCTCCTCTCGGTGGGATATAAAAACGTCATNGGTGCCCGGAGAGCCTCTTGGCGCATTATGTCCTCAATTGAGCAGAAGGAAGAATCTAAGGGAAATGAACACAATGTTAAACTGATCAAGAGTTACCGCCAAAAGGTTGAGGAGGAACTCTGCAAAATTTGCGGTGACATTCTTACAATCATAGACCAGCATCTAGTTCCTTCTTCCACCTCAGCAGAAGCTAATGTTTTCTATTATAAGATGAAAGGTGATTATTATCGGTATCTTGCTGAGTTCAAGACCGACCAAGATAGGAAAGAGGCTGCTGAGCAGTCACTGAAAGGATATGAGGCTGCTTCAGCCACTGCAAACNCTGATCTTCCATCAACACATCCAATCCGTCTTGGACTTGCACTCAACTTCTCTGTCTTTTATTATGAGATAATGAACTCTCCTGAAAGGGCCTGTCATTTGGCTAAACAAGCTTTTGATGAGGCGATTGCGGAGTTGGATACCTTGAGTGAAGANTCGTACAAGGACAGCACTTTGATCATGCAGTTGTTGAGAGACAACCTGACTCTCTGGACCTCCGATTTGCCAGAGGATGGAGGTGAGGATAACATAAAAGCTGAAGAAGCCAAAGAAGCCAAACCTACTGAGCCTGAGGTATCATTGACAAAGTTCCTTTGGATCTCTGGCTCTGATTCGGTAGTCAGATATCCAAGGTACTCTGCAAAGAGGGCATTTTTCAGCTTTTCTTGCAATGGGTTTGGACTGGACAATGTGGACTTTGCCACTTCACAATTCTTGTGCCCTCCTAGTTATCCAACCAAAGCCAGAAGATCTGTGCCTGTCTTTTGCAATGAGCTGAAGGCTAGCGTGGAGTACCGTTCTTCCGTTCTTGTAGAAGAACGCATCAATCAATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01946	38397	42359	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0019904 protein domain specific binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001946s00034915.1	PF00244.15	2014/3/3	1	216	6.60E-105

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.333
SRR1783600	control	7.208
SRR1783602	moderate drought stress	2.977
SRR1811619	moderate drought stress	2.916

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	15.849
DRR006520	Root Summer glycyrrhizin high producing strain	16.071
DRR006521	Root Winter glycyrrhizin high producing strain	1.242
DRR006522	Root Winter glycyrrhizin high producing strain	1.285
DRR006523	Root Summer glycyrrhizin low producing strain	4.381
DRR006524	Root Summer glycyrrhizin low producing strain	4.597
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.918
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.094

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	61.743
SRR2868004	Drought Stress (root)	27.213
SRR2967015	Control (root)	26.818

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.195
SRR9715740	Leaf	1.973
SRR9715741	Leaf	6.001
SRR9715739	Root	9.874
SRR9715742	Root	9.531
SRR9715743	Root	7.639

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	86.193
SRR8749028	MeJA induced 9h	28.652
SRR8749029	MeJA induced 9h	31.552
SRR8749030	Uninduced	12.720
SRR8749031	Uninduced	9.954
SRR8749032	Uninduced	12.189

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	21.226
SRR8400027	Control - Root	20.955