Gene detail

Gene detail information of Glyur001946s00034914

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G26500.1	3.00E-169	Pentatricopeptide repeat (PPR) superfamily protein
NR	XP_003614047.1	0	hypothetical protein MTR_5g044120 [Medicago truncatula]
Swissprot	tr\|Q9FZD4\|PPR59_ARATH	0	Putative pentatricopeptide repeat-containing protein At1g26500
trEMBL	tr\|G7JWT0\|G7JWT0_MEDTR	0	PPR containing plant-like protein {ECO:0000313\|EMBL:AES97005.1}

Sequence

Transcript Sequence

>Glyur001946s00034914.1
ATGCTTCTCCGGCGAACAACCGCGCTTCTATTCTCAAACAGCCTAACCGCGCAACCACTCCGGCGCCACCTCAGCGACCACCACCCCAACAACCCCATTTCACCGGTGAACCCAGACTCACTCCTCCGCGTTTGCACCATCCTATACCAGCAGCAGGACTCGCCCGAGTCACGCCTCCACTCAAAACTCGCCTCGTGCTTCGACGAGTCCACCCAACAACAACTCACCCACGAGTTCTTCCTCCAGGTATGCAACACCTTCCCTTACTCCTGGCGACCCGTTTACCGCTTCTTCCTCTACACCCAACAATCAACAACAACCACCTTCACCCACACCCCTCTCTCCTTCAACAAGATGCTCGATGTTATCGGCAACTCCCGCAACATCGACCTCTTCTGGAACCTTCTAAACGACGCCGCACGGCGCCGTTTCGCCAACGACAAGACCTGCGTCATCGCTGTCAAGACCCTCGGTGGTGCCAGGGAGCTGAAAAAGTGCGTGGAGTTTTTCCACTTGATGAATTCCAATGGTTATAATGGTTACAGCCTCGTGACCCTGAACAAGGTGGTTGAGGCAATGTGTGGGTCCAAGCTTGTGGAAGAGGCAAAGTTCGTTGCTTTCAAGATGAAGGAGTGGATTGGGCTTGATGGGGTGACCTATAAGCATTTGATTGGTGGGTTCTGTGATAAGGGTGATTTGGTTGAGGCTTCCAAGATTTGGAACCTTATGGTGGATGAAGGGTTTGAGGCTGAGGTTGATGCTGTTGAGAAAATGATGGAGACGTTTTTTAAGGCCAATCAGTATGGTGAGGCCTTAAAGCTCTTTCAGGTAATGAGGCTGAAGAGGATGGATCAGCTTGGTCTTTCAACTTATAGGCTTGTGATTAAGTGGATGTGTAAGAAGGGATTGATGTCCGAAGCCCAGGTGGTGTTTGATGAAATGCGCGAGAGGGGTATTCGAATCGATAACTTGACATTGGGATCTGTTGTGTATGGGNTTCTAACAAAACGCAGGGTTAGAGAGGCTTATCAGGTTGTGGAGGGGATTGATGGTGTGCCGGATATAAGTGTCTATCATGGGTTGATAAAAGGGCTTTTGAGGTTGAGAAGGGCAGGGGAAGCAACTGAGGTGTTTAGGGAGATGATAAGGAGGGGTTGCGAGCCGACGATGCACACCTATGTGATGCTGTTGCAGGGCCATCTGGGTAGGAGAGGAAGGAAGGGGTCCGATCCCCTTATCAATTTCGACACCATTTTTGTGGGTGGTTTGGTGAAAGCAGGAAGGTCAAGGGAAGCCACTAAGTATGTGGAGAGGGTGAGGAACAGAGGGATGGAGGTGCCAAGGTTTGATTATAACAAGTTTTTGCATTACTTTTCAAATGAGGAAGGTGTGGTGATGTTTGAGGAGGTGGGTAAAAAATTGAGGGAAGTTGGGTTGGTTGATTTGGCAGACATACTTGAGAGATATGGGCAGAAGATGGCTACTAGAGATAGGAGAAGGAACAGATGTCCAATAACTGAAGACACTAATGGCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01946	34266	35801	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001946s00034914.1	PF01535.15	PPR	218	248	2.30E-05
Glyur001946s00034914.1	PF13041.1	PPR_2	290	329	2.60E-08
Glyur001946s00034914.1	PF13041.1	PPR_2	353	399	1.10E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.033
SRR1783600	control	1.058
SRR1783602	moderate drought stress	1.483
SRR1811619	moderate drought stress	1.437

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.763
DRR006520	Root Summer glycyrrhizin high producing strain	1.876
DRR006521	Root Winter glycyrrhizin high producing strain	1.089
DRR006522	Root Winter glycyrrhizin high producing strain	0.949
DRR006523	Root Summer glycyrrhizin low producing strain	0.870
DRR006524	Root Summer glycyrrhizin low producing strain	1.085
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.258
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.078

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.765
SRR2868004	Drought Stress (root)	2.272
SRR2967015	Control (root)	1.803

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.711
SRR9715740	Leaf	1.082
SRR9715741	Leaf	0.532
SRR9715739	Root	0.317
SRR9715742	Root	0.686
SRR9715743	Root	0.981

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.400
SRR8749028	MeJA induced 9h	1.055
SRR8749029	MeJA induced 9h	0.516
SRR8749030	Uninduced	0.082
SRR8749031	Uninduced	0.100
SRR8749032	Uninduced	0.111

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.681
SRR8400027	Control - Root	2.887