Gene detail information of Glyur001946s00034913 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G26520.1 | 2.00E-142 | Cobalamin biosynthesis CobW-like protein |
| NR | AFK35605.1 | 0 | unknown [Lotus japonicus] |
| COG | YP_007065771.1 | 6.00E-80 | cobalamin synthesis protein P47K [Calothrix sp. PCC 7507] |
| trEMBL | tr|I3S5R3|I3S5R3_LOTJA | 0 | Uncharacterized protein {ECO:0000313|EMBL:AFK35605.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01946 | 28035 | 32444 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001946s00034913.1 | PF02492.14 | cobW | 46 | 236 | 3.20E-52 |
| Glyur001946s00034913.1 | PF07683.9 | CobW_C | 283 | 376 | 7.50E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.671 |
| SRR1783600 | control | 10.631 |
| SRR1783602 | moderate drought stress | 10.332 |
| SRR1811619 | moderate drought stress | 10.391 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 22.555 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 22.354 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 35.200 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 34.141 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 15.065 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 15.163 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.185 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.232 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 38.860 |
| SRR2868004 | Drought Stress (root) | 29.942 |
| SRR2967015 | Control (root) | 28.730 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 12.611 |
| SRR9715740 | Leaf | 18.121 |
| SRR9715741 | Leaf | 18.950 |
| SRR9715739 | Root | 7.407 |
| SRR9715742 | Root | 13.083 |
| SRR9715743 | Root | 12.419 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 22.472 |
| SRR8749028 | MeJA induced 9h | 17.658 |
| SRR8749029 | MeJA induced 9h | 17.314 |
| SRR8749030 | Uninduced | 10.772 |
| SRR8749031 | Uninduced | 8.832 |
| SRR8749032 | Uninduced | 5.448 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 35.518 |
| SRR8400027 | Control - Root | 32.058 |