Gene detail information of Glyur001945s00040523 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G13950.1 | 8.00E-05 | |
| NR | AFK40766.1 | 5.64E-17 | unknown [Lotus japonicus] |
| trEMBL | tr|I3SKH4|I3SKH4_LOTJA | 2.00E-17 | Uncharacterized protein {ECO:0000313|EMBL:AFK40766.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01945 | 16195 | 17362 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001945s00040523.1 | PF13962.1 | PGG | 30 | 100 | 3.10E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 20.885 |
| SRR1783600 | control | 17.690 |
| SRR1783602 | moderate drought stress | 1.465 |
| SRR1811619 | moderate drought stress | 1.172 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.055 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.781 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.081 |
| SRR2868004 | Drought Stress (root) | 25.262 |
| SRR2967015 | Control (root) | 31.400 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.727 |
| SRR9715740 | Leaf | 0.326 |
| SRR9715741 | Leaf | 5.565 |
| SRR9715739 | Root | 5.283 |
| SRR9715742 | Root | 2.061 |
| SRR9715743 | Root | 2.157 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 26.354 |
| SRR8749028 | MeJA induced 9h | 32.604 |
| SRR8749029 | MeJA induced 9h | 18.993 |
| SRR8749030 | Uninduced | 148.220 |
| SRR8749031 | Uninduced | 303.923 |
| SRR8749032 | Uninduced | 121.671 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.586 |
| SRR8400027 | Control - Root | 1.206 |