Gene detail information of Glyur001944s00035557 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G24730.1 | 2.00E-69 | mRNA splicing factor, thioredoxin-like U5 snRNP |
| NR | XP_004496162.1 | 1.80E-96 | PREDICTED: thioredoxin-like protein 4B-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q9FE62|YLS8_ARATH | 5.00E-24 | Thioredoxin-like protein YLS8 |
| trEMBL | tr|A0A067K2B6|A0A067K2B6_JATCU | 1.00E-92 | Uncharacterized protein {ECO:0000313|EMBL:KDP26410.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01944 | 45721 | 49182 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001944s00035557.1 | PF02966.11 | DIM1 | 5 | 137 | 1.70E-48 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.803 |
| SRR1783600 | control | 6.130 |
| SRR1783602 | moderate drought stress | 6.327 |
| SRR1811619 | moderate drought stress | 5.921 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.972 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.444 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.931 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.181 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.003 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.831 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.405 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.660 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.740 |
| SRR2868004 | Drought Stress (root) | 8.877 |
| SRR2967015 | Control (root) | 7.944 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.894 |
| SRR9715740 | Leaf | 3.114 |
| SRR9715741 | Leaf | 4.947 |
| SRR9715739 | Root | 6.543 |
| SRR9715742 | Root | 4.029 |
| SRR9715743 | Root | 2.942 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.716 |
| SRR8749028 | MeJA induced 9h | 6.588 |
| SRR8749029 | MeJA induced 9h | 11.370 |
| SRR8749030 | Uninduced | 17.598 |
| SRR8749031 | Uninduced | 27.125 |
| SRR8749032 | Uninduced | 21.239 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.021 |
| SRR8400027 | Control - Root | 6.656 |