Gene detail information of Glyur001944s00035555 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G10530.1 | 7.00E-23 | Concanavalin A-like lectin protein kinase family protein |
| NR | AAA80183.1 | 1.22E-79 | lectin [Robinia pseudoacacia] |
| COG | NP_864945.1 | 8.00E-08 | glucosesorbosone dehydrogenase [Rhodopirellula baltica SH 1] |
| Swissprot | tr|Q41160|LCB3_ROBPS | 9.00E-82 | Putative bark agglutinin LECRPA3 (Precursor; Fragment) |
| trEMBL | tr|Q9ZWP4|Q9ZWP4_ROBPS | 4.00E-78 | Lectin-related polypeptide {ECO:0000313|EMBL:BAA36416.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01944 | 38750 | 39574 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001944s00035555.1 | PF00139.14 | Lectin_legB | 31 | 251 | 2.50E-60 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 16315.240 |
| SRR1783600 | control | 16998.682 |
| SRR1783602 | moderate drought stress | 41492.004 |
| SRR1811619 | moderate drought stress | 41073.598 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13757.144 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15691.680 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 138.058 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 135.364 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2220.053 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2210.646 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.838 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.695 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.567 |
| SRR2868004 | Drought Stress (root) | 0.120 |
| SRR2967015 | Control (root) | 0.006 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 404.244 |
| SRR8400027 | Control - Root | 0.021 |