Gene detail information of Glyur001944s00035551 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G10530.1 | 8.00E-24 | Concanavalin A-like lectin protein kinase family protein |
| NR | BAA36416.1 | 1.65E-84 | lectin-related polypeptide [Robinia pseudoacacia] |
| Swissprot | tr|Q41160|LCB3_ROBPS | 8.00E-85 | Putative bark agglutinin LECRPA3 (Precursor; Fragment) |
| trEMBL | tr|Q9ZWP4|Q9ZWP4_ROBPS | 6.00E-85 | Lectin-related polypeptide {ECO:0000313|EMBL:BAA36416.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01944 | 23875 | 24705 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001944s00035551.1 | PF00139.14 | Lectin_legB | 31 | 253 | 7.50E-56 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4796.836 |
| SRR1783600 | control | 4748.853 |
| SRR1783602 | moderate drought stress | 12940.309 |
| SRR1811619 | moderate drought stress | 12901.623 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 761.423 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 752.706 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.269 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.262 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 572.796 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 568.779 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.895 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.781 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.102 |
| SRR2868004 | Drought Stress (root) | 0.000 |
| SRR2967015 | Control (root) | 0.511 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.101 |
| SRR9715743 | Root | 0.081 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 17.731 |
| SRR8400027 | Control - Root | 0.000 |