Gene detail information of Glyur001944s00035546 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G10530.1 | 2.00E-28 | Concanavalin A-like lectin protein kinase family protein |
| NR | BAA36416.1 | 3.61E-81 | lectin-related polypeptide [Robinia pseudoacacia] |
| Swissprot | tr|Q41160|LCB3_ROBPS | 4.00E-82 | Putative bark agglutinin LECRPA3 (Precursor; Fragment) |
| trEMBL | tr|Q9ZWP4|Q9ZWP4_ROBPS | 1.00E-81 | Lectin-related polypeptide {ECO:0000313|EMBL:BAA36416.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01944 | 113 | 943 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001944s00035546.1 | PF00139.14 | Lectin_legB | 32 | 253 | 1.20E-58 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 13388.792 |
| SRR1783600 | control | 12926.765 |
| SRR1783602 | moderate drought stress | 27242.074 |
| SRR1811619 | moderate drought stress | 29247.396 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3411.539 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3666.372 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.223 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.212 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2175.456 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2042.951 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.847 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.023 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.603 |
| SRR2868004 | Drought Stress (root) | 0.059 |
| SRR2967015 | Control (root) | 15.456 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1579.644 |
| SRR8400027 | Control - Root | 0.673 |