Gene detail information of Glyur001937s00037267 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G43610.1 | 4.00E-58 | Spc97 / Spc98 family of spindle pole body (SBP) component |
| NR | XP_004511289.1 | 0 | PREDICTED: uncharacterized protein LOC101489155 isoform X2 [Cicer arietinum] |
| trEMBL | tr|A0A072UCI8|A0A072UCI8_MEDTR | 0 | Spc97/Spc98 family of spindle pole body (SBP) component {ECO:0000313|EMBL:KEH27317.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01937 | 19365 | 34534 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001937s00037267.1 | PF04130.8 | Spc97_Spc98 | 1 | 566 | 6.70E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.637 |
| SRR1783600 | control | 5.571 |
| SRR1783602 | moderate drought stress | 4.642 |
| SRR1811619 | moderate drought stress | 4.820 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.069 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.955 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.697 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.453 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.446 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.330 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.593 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.964 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 17.802 |
| SRR2868004 | Drought Stress (root) | 16.238 |
| SRR2967015 | Control (root) | 14.843 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.267 |
| SRR9715740 | Leaf | 4.656 |
| SRR9715741 | Leaf | 7.132 |
| SRR9715739 | Root | 0.827 |
| SRR9715742 | Root | 5.685 |
| SRR9715743 | Root | 6.391 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.071 |
| SRR8749028 | MeJA induced 9h | 13.067 |
| SRR8749029 | MeJA induced 9h | 4.512 |
| SRR8749030 | Uninduced | 2.627 |
| SRR8749031 | Uninduced | 1.973 |
| SRR8749032 | Uninduced | 1.142 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 16.918 |
| SRR8400027 | Control - Root | 17.433 |