Gene detail

Gene detail information of Glyur001936s00032202

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G05200.1	1.00E-27	cysteine-rich RLK (RECEPTOR-like protein kinase) 25
NR	XP_004511117.1	3.30E-101	PREDICTED: cysteine-rich receptor-like protein kinase 10-like isoform X3 [Cicer arietinum]
Swissprot	tr\|Q9M0X5\|CRK25_ARATH	3.00E-35	Cysteine-rich receptor-like protein kinase 25 (Precursor)
trEMBL	tr\|G7LJ38\|G7LJ38_MEDTR	6.00E-101	Salt stress response/antifungal domain protein {ECO:0000313\|EMBL:AET02524.2}

Sequence

Transcript Sequence

>Glyur001936s00032202.1
ATGAGGAGGTATCTTAGCTTCATGCCCCTCCTCGTTCCCCTCCTCCTCCTCCTCCTCTTCAACCCAACAACAAGTGCACAACCCCCAATTTACATGTACAAGTATTGCCAGAACTCAACAACAGGGAAANCTCTCACCACTTCTTCATACCAAACCAACGTTAACAACTTCCTCTCATGGATAATATCTGATTCTGCCAAAGGCACACAATCCAACAACACCACCTTAGGCAGCAACAACAATGATGATGATGTNGTTTATGGGAACTATGATTGTAGGGGTGACATCATNGGACATTTCTGTCAATTCTGTCTCAACACTGCAATCACAGAAATCGGTCAACGTTGTCCAAACAGTGTCTCAGCTGTGATNTGGTATGACATATGCATCATCCGTTACTCTAACCAGAACTTCTTTGNGAAACTCTCCACAACCCCATCATGGAATTTCACTGAATCCAAAACCATAAAGGACTCAAGAGAGCTTGTGAAGGCAGAGGATTCAATGGGGGGTTTGATAAGAGAAGCAACAAGTATAGGGGCTAACAAGAGTTGGGCAATGAGTGAGTTCAATTGGGGTGGCAATGAGAGAAGGTATGGTTGGGTGCAGTGTGCAAGAGAACTTGGTAAGGATGAGTGCAGGCAGTGTTTGGAGGCTATGTTGGAGTTGGTTCCACAATGCTGTGGGACAAAGGTGGCATGGGCTGTTGTGGCTCCAAGCTGTGGGATGAAGTTTGATGATTATATGTTTTATTCTACTCCTATGACAAATCCAGCCAAGCAGGAAGGTTCAATTGTTGTCTCTACTACTGCTGGAGCAGGAATTGGTTGTGTAAAGACTTGGAGACTGTGGTGTGAAGGAAGAAGTTTGGAATTAATCGATCCAATCCACAGAAAAACATGCATTGAGAGTGAAGTTATGAAGTGCATACACATTGGTTTGTTGTGTGTACAAGAGGATGCAGCAGATCGACCAACCATGTCCACCGTTGTTCTCATGCTAGGGAGTGACACAATGGCACTTCCAAAACCCAAGCAACCTGCATTTTCAATTGGAAGAATGGCCAACGAAGAAGAGTCTTCAAAATATTCTAAGGACAATTCTGTTAACGAAGTAACAGTAACTATTGTTACACCTAGGTAGTTGCATATAACAGGATTGATGTTTTACTATGAACTTAAGCCTGCATTTGTAAATGATGAGCATTTTGGTTTTACGATTTNTATCTGGGATGGAAAATTGTAGTTATGTATTTAGAAGTGACACATTGGCCAAACCAATGCAAAAGATTGGAAACCACATACATGGCTTGGGGGATCCGATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01936	42101	46870	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0004674 protein serine/threonine kinase activity

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001936s00032202.1	PF01657.12	Stress-antifung	33	138	3.90E-21
Glyur001936s00032202.1	PF01657.12	Stress-antifung	172	249	2.00E-09
Glyur001936s00032202.1	PF11883.3	DUF3403	336	380	2.90E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.229
SRR1783600	control	2.142
SRR1783602	moderate drought stress	2.682
SRR1811619	moderate drought stress	2.494

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.745
DRR006520	Root Summer glycyrrhizin high producing strain	0.679
DRR006521	Root Winter glycyrrhizin high producing strain	11.592
DRR006522	Root Winter glycyrrhizin high producing strain	11.538
DRR006523	Root Summer glycyrrhizin low producing strain	0.249
DRR006524	Root Summer glycyrrhizin low producing strain	0.250
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.893
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.355

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.047
SRR2868004	Drought Stress (root)	1.240
SRR2967015	Control (root)	1.170

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.111
SRR9715740	Leaf	22.709
SRR9715741	Leaf	13.298
SRR9715739	Root	0.281
SRR9715742	Root	0.771
SRR9715743	Root	0.316

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.379
SRR8749028	MeJA induced 9h	0.138
SRR8749029	MeJA induced 9h	0.049
SRR8749030	Uninduced	3.491
SRR8749031	Uninduced	5.008
SRR8749032	Uninduced	1.093

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.106
SRR8400027	Control - Root	4.410