Gene detail

Gene detail information of Glyur001936s00032193.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G12480.1	3.00E-56	nuclear factor Y, subunit C11
NR	AFK42220.1	1.45E-136	unknown [Lotus japonicus]
Swissprot	tr\|Q9ZVL3\|NFYC3_ARATH	3.00E-12	Nuclear transcription factor Y subunit C-3
trEMBL	tr\|I3SPM8\|I3SPM8_LOTJA	5.00E-137	Uncharacterized protein {ECO:0000313\|EMBL:AFK42220.1}

Sequence

Transcript Sequence

>Glyur001936s00032193.1
TGCTCNGCAACTATTGGGCCGTTACACGATTTCCCGTGACCGACGTGTTACTCTGACAAAGCTCACACAAAGGCATATTACGTTGAACGAATCTCAGAGATNGAGTGTGTTCCTATGGATCTGAGATGGTTTCCGTAGATTTGATCGCGTTGACGTTGGGGGCACTCTTTTTGTTCAAAGTTTTCGATTTCACTTTCTGTGTCTCCTTCTTCTGCTTCATTTGATCCACACACACACACCCCCAATTCAGTGTTCCCTAAAAAATTCTGTTACCATGAGGAAGAAGCTCGATACCCGTTTCCCTGCTGCTCGGATAAAGAAGATAATGCAAGCAGACGAAGATGTTGGAAAGATAGCACTGGCTGTGCCTGTTTTAGTTTCTAAAGCTCTAGAGCTATTTCTGCAAGATCTCTGTGACCGCACTTATGAAATCACTCTTCAAAGAGGAGCAAAAACCATGAATTCATTGCATTTAAAACATTGTGTACAAAGCTATAGTGTCTTTGACTTTCTGAAGGACGTAGTCAGCAGGGTTCCTGACTATGGCCATGGTCATGGCCACACTGACGCTGGTGCTGATGATCGGGCCATTCCAAAACGAAGGAAAGCTGTGGGTGATGATTGTAATGACAGTGATGAAGAGGCTAAAAGGAGCAAGATGCGTGAGCTGAGCCACACTGGCAGTACTGGTAGGGGAAGAGGCCGAGGCAGAGGAAGAGGAAGAGGACGTGGCCGAGCGTCTCAAACTGTAGTAAGAGAGACATATCATCAGGAAGCCGAAGCTGAGCCTTGTGCTTCTGTTCAGCAAGGTAGCCAACATACTACAAATACAAGTGTTGCAGCAATACATAATGATTCAGAGTCAAAGGAGTTACCAAAGGAGGACATTGCAGTTCCTGTTGAGAGTTCTGAGCCACCCTGCAATATTGATCTGAATGCCAACATGAACATGAACGAAAATGATGACAAAAAGGCAAGCACAGCAGCAGCTAATCCCCCAGTGTCTGAACCTGANCCTCCAACAGACAGCAGCAAGCAGCATGAAGAGATTCCGGGGTGGTCCCTTTCTGATGTGGACAAGATGGCCATTGATTCGATGCAGCTTGCACACCTTGGTACGCGACTAGAAGAGGACGAGGAAGATTATGACGAGGAAGGGTGAATCNTAGTCTTTGGGGTGGTGATTAGATTTAGTTAAAAGCTTCATTATAAGTGTAGAATAAGTATATACTAGTGCTATGATTTTAAGTATCCCCCTAGTTGTCATAACATGTCCCATGTTGTTGACTGAAAAAAATGTTCTGAATGTCCCCTTTTTAAAANAATTGGTTTGTCTATGTTAGCACATNTTCTCTTGTACCTGATGTAGCTTTCCCTGTTAGCTTCGTGTACTTTTAGGCCTATATATAATGTATGTATGTACATCACAATTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01936	10063	14143	-

Gene family

Gene family	subfamily
Transcription Factors Family	NF-YC
EAR motif-containing Proteins	NF-YC

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005622 intracellular

molecular_function

GO:0043565 sequence-specific DNA binding

GO:0046982 protein heterodimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001936s00032193.1	PF00808.18	CBFD_NFYB_HMF	8	71	2.30E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	56.920
SRR1783600	control	57.052
SRR1783602	moderate drought stress	60.543
SRR1811619	moderate drought stress	60.623

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	60.855
DRR006520	Root Summer glycyrrhizin high producing strain	59.818
DRR006521	Root Winter glycyrrhizin high producing strain	85.804
DRR006522	Root Winter glycyrrhizin high producing strain	84.600
DRR006523	Root Summer glycyrrhizin low producing strain	80.548
DRR006524	Root Summer glycyrrhizin low producing strain	81.039
DRR006525	Leaf Summer glycyrrhizin high producing strain	51.130
DRR006526	Leaf Summer glycyrrhizin high producing strain	51.574

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	74.431
SRR2868004	Drought Stress (root)	90.366
SRR2967015	Control (root)	93.791

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	50.307
SRR9715740	Leaf	55.077
SRR9715741	Leaf	58.897
SRR9715739	Root	15.077
SRR9715742	Root	36.322
SRR9715743	Root	32.560

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	100.425
SRR8749028	MeJA induced 9h	106.115
SRR8749029	MeJA induced 9h	91.179
SRR8749030	Uninduced	117.528
SRR8749031	Uninduced	101.771
SRR8749032	Uninduced	75.362

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	76.671
SRR8400027	Control - Root	66.134