Gene detail information of Glyur001936s00032191 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G12490.2 | 3.00E-77 | cystatin B |
| NR | XP_004511090.1 | 5.40E-141 | PREDICTED: cysteine proteinase inhibitor 12-like [Cicer arietinum] |
| Swissprot | tr|Q0JNR2|CYT12_ORYSJ | 1.00E-98 | Cysteine proteinase inhibitor 12 (Precursor) |
| trEMBL | tr|I1M0K3|I1M0K3_SOYBN | 9.00E-131 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G25870.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01936 | 2182 | 5903 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001936s00032191.1 | PF00031.16 | Cystatin | 55 | 135 | 7.40E-14 |
| Glyur001936s00032191.1 | PF00031.16 | Cystatin | 156 | 227 | 0.00015 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 155.271 |
| SRR1783600 | control | 155.644 |
| SRR1783602 | moderate drought stress | 135.824 |
| SRR1811619 | moderate drought stress | 133.832 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 221.335 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 218.695 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1829.260 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1783.727 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 217.277 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 215.732 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 118.809 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 117.809 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 96.013 |
| SRR2868004 | Drought Stress (root) | 85.792 |
| SRR2967015 | Control (root) | 102.978 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 88.656 |
| SRR9715740 | Leaf | 89.879 |
| SRR9715741 | Leaf | 78.784 |
| SRR9715739 | Root | 119.177 |
| SRR9715742 | Root | 112.805 |
| SRR9715743 | Root | 107.492 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 156.324 |
| SRR8749028 | MeJA induced 9h | 116.340 |
| SRR8749029 | MeJA induced 9h | 151.411 |
| SRR8749030 | Uninduced | 71.521 |
| SRR8749031 | Uninduced | 34.489 |
| SRR8749032 | Uninduced | 75.251 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 118.261 |
| SRR8400027 | Control - Root | 120.694 |