Gene detail

Gene detail information of Glyur001935s00034600

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G26670.3	1.00E-172	Protein of unknown function (DUF803)
NR	XP_007151693.1	0	hypothetical protein PHAVU_004G068100g [Phaseolus vulgaris]
Swissprot	tr\|Q8RWF4\|NIPA8_ARATH	0	Probable magnesium transporter NIPA8
trEMBL	tr\|V7C0K4\|V7C0K4_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW23687.1}

Sequence

Transcript Sequence

>Glyur001935s00034600.1
GTGCCTTCACAAATGTTGAATTGAAAGGATTACTCTTTTGTTCTTCTGACACTGGCCCACTTGGTGGTCTTAGAAGAGAGGCTGCTGCTATCTTCCTTTCTGCCCCAGCTTTGCCTTGTGTGTGCAGAATTTGAGAACTAACCTCTGTTAGTGTTAGAGACAGTGTCCTCAAGTTTTGTTGCTGCATGTGGTGTCTCCTTCGCGGTGCCACATCTTTTATCCATGGGGGAGTGGATTGTTGGAGCTGTCATTAACCTCTTTGGTAGTATTGCCATAAACTTTGGGACCAATCTTCTCAAATTAGGACATAATGAGAGAGAAAGACATACACTTGGAAGTGATGGTATAAATGGAAAGATGACTCTGAAGCCTATTATATACTTCCAAAGTTGGAGAATTGGTATCCTATTTTTCTTTTTTGGAAATTGCCTTAATTTCATTTCCTTTGGGTATGCTGCTCAGTCACTTCTTGCAGCCCTGGGATCTGTTCAGTTTGTATCTAACCTCGCCTTTGCCTACTTTGTCTTGAACAAAATGGTGACAGTCAAGGTACTGGTCGCCACAGCTTTCATTGTTCTTGGAAACATTTTCCTAGTTGCTTTTGGCAATCACCAATCACCTGTTTATACACCGGAGCAGTTGGCAGAGAAATATACCAANGCTGCATTCATTCTGTACCTTCTAGCATTGATCTTAATTGTTGCTTTGCATCACACCATTTACAAGCGAGGAGAACTTGTGCTTGCTGTATCAGGACATGACCTCAGACCCTTTTGGAGTATGCTACTGCCCTTTTCATATGCTGTAGTTTCAGGGGCNGTAGGTTCATGCTCAGTGTTGTTTGCCAAATCGCTTTCTAACCTCTTACGTCTGGCTATGTCCAATGGTTATCAGTTGCACAGCTGGTTCACATATTCCATGCTTCTTTTATTTCTTAGTACTGCTGGATTTTGGATGACCAGGTTGAATGAAGGACTGTCCTTGTTCGATGCAATTCTCATTGTTCCCATGTTCCAGATAGCATGGACTTTCTTCTCAATATGTACAGGATTTATATATTTTCAGGAATATCAGGTATTTGATACGTTAAGGACAACAATGTTTATACTTGGAATGATGTGTGTGTTCATTGGCATTTCTTTGCTGGCACCTGATGAATCAAAAGGTGCTGAGACTAAAGATAGTTCTTTGGATTCCGTGGTGTCTCCTGCCATTGCAACAGAAGAGAAGAGGCTGCTAGTGTCTTCAGAAGAAGCACAAAACAAAGACCCAAGATCTTTTGTCAAAGGAATGCTGATAAAGGTTACAGATATGTTGGTCAAGGCAAAGAATTCTTGTGCATTATCTCTTCGTCTTGGGGAGGATACCATCAATGCATCTTCAGTTCTTGTAATGCCAATGATGTCATCAAGAATGACCGGATTCAGAGGTACCGGGCTNGAACGGGCAAGGATATTGTCGATGAGAAATTCCGGTTGGAGCAAGATCCCTGGGGATGAAGATGCTGGGAAATTGCTTGAAACTAGTCCAATGATCCCTCCTAGCCCTTGACTGTTTGTTTGATAATATAGCCATAGGATGTCCCACGGTGTGGATTTTCTTTTTCTTTGTTCTNCTCCCATTTTTTTCTCAATGATTGTTGTAGTAGCTGAGATACAAACCCTTCATAATTCAATTATTATTTGCTCTGTTGAGCATTCATGTAATCTTCCCACGAGGGAAAAGAGGATGGAAAAATTGTTGTATATTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01935	42053	49222	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0015693 magnesium ion transport

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0015095 magnesium ion transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001935s00034600.1	PF05653.9	Mg_trans_NIPA	5	309	6.00E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.044
SRR1783600	control	11.444
SRR1783602	moderate drought stress	9.238
SRR1811619	moderate drought stress	9.017

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.873
DRR006520	Root Summer glycyrrhizin high producing strain	11.229
DRR006521	Root Winter glycyrrhizin high producing strain	3.137
DRR006522	Root Winter glycyrrhizin high producing strain	3.089
DRR006523	Root Summer glycyrrhizin low producing strain	12.007
DRR006524	Root Summer glycyrrhizin low producing strain	11.959
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.003
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.201

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	41.379
SRR2868004	Drought Stress (root)	62.790
SRR2967015	Control (root)	43.064

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	53.210
SRR9715740	Leaf	26.473
SRR9715741	Leaf	74.327
SRR9715739	Root	5.988
SRR9715742	Root	12.370
SRR9715743	Root	11.509

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.023
SRR8749028	MeJA induced 9h	27.585
SRR8749029	MeJA induced 9h	14.319
SRR8749030	Uninduced	17.809
SRR8749031	Uninduced	24.170
SRR8749032	Uninduced	15.111

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	32.869
SRR8400027	Control - Root	34.959