Gene detail information of Glyur001933s00036040 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G08920.1 | 0 | cryptochrome 1 |
| NR | NP_001241002.1 | 0 | cryptochrome-1-like [Glycine max] |
| COG | YP_004652658.1 | 2.00E-129 | hypothetical protein PUV_18540 [Parachlamydia acanthamoebae UV-7] |
| Swissprot | tr|Q43125|CRY1_ARATH | 0 | Cryptochrome-1 |
| trEMBL | tr|D0FZ12|D0FZ12_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G10830.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01933 | 9749 | 14829 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001933s00036040.1 | PF00875.13 | DNA_photolyase | 8 | 165 | 5.60E-41 |
| Glyur001933s00036040.1 | PF03441.9 | FAD_binding_7 | 209 | 481 | 9.40E-85 |
| Glyur001933s00036040.1 | PF12546.3 | Cryptochrome_C | 512 | 627 | 1.30E-31 |
| Glyur001933s00036040.2 | PF00875.13 | DNA_photolyase | 8 | 165 | 5.50E-41 |
| Glyur001933s00036040.2 | PF03441.9 | FAD_binding_7 | 209 | 481 | 9.30E-85 |
| Glyur001933s00036040.2 | PF12546.3 | Cryptochrome_C | 512 | 627 | 1.30E-31 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 27.003 |
| SRR1783600 | control | 27.008 |
| SRR1783602 | moderate drought stress | 33.264 |
| SRR1811619 | moderate drought stress | 33.201 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 21.373 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 21.257 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 37.108 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 36.341 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 16.743 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 16.812 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 52.304 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 51.877 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 33.916 |
| SRR2868004 | Drought Stress (root) | 48.152 |
| SRR2967015 | Control (root) | 51.743 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 53.281 |
| SRR9715740 | Leaf | 81.957 |
| SRR9715741 | Leaf | 74.868 |
| SRR9715739 | Root | 6.310 |
| SRR9715742 | Root | 26.626 |
| SRR9715743 | Root | 22.538 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 17.244 |
| SRR8749028 | MeJA induced 9h | 34.562 |
| SRR8749029 | MeJA induced 9h | 12.556 |
| SRR8749030 | Uninduced | 18.175 |
| SRR8749031 | Uninduced | 9.414 |
| SRR8749032 | Uninduced | 6.649 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 36.120 |
| SRR8400027 | Control - Root | 31.765 |