Gene detail

Gene detail information of Glyur001932s00039791

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G77620.1	5.00E-136	P-loop containing nucleoside triphosphate hydrolases superfamily protein
NR	XP_004500554.1	0	PREDICTED: uncharacterized protein LOC101491991 isoform X3 [Cicer arietinum]
COG	YP_004577132.1	3.00E-10	Replication factor C large subunit [Methanothermococcus okinawensis IH1]
Swissprot	tr\|Q2R2B4\|RFC1_ORYSJ	6.00E-14	Replication factor C subunit 1
trEMBL	tr\|G7J301\|G7J301_MEDTR	0	P-loop nucleoside triphosphate hydrolase superfamily protein, putative {ECO:0000313\|EMBL:AES71294.2}

Sequence

Transcript Sequence

>Glyur001932s00039791.1
ATGGTCGGCCCCGTCACGGAGCTTAGCCCTTCCTGCAATGCCGGCACACCGGCGGGCCGCAGTGTCCGCCGGAGGTTGGTCCAATCGACGCTCTTCCCTCACAAGCCACCTGAACCCCGCCACAAACCCGACCAAAACGACGACGCAGATGATGAACAAGACGATGATGATTACATCGACACCGAAAATNGCAAGAAGAGGAAGAAGCCGAAGGCTAAAGCCACTCCTCCAAAAAAAGGTCCCAAGAGTGCCACGCCAAAGAAAAATTCACCAGCTAATGGAATTAAGGGGTCAACTTCGCAGCATGTTTTCGCTGTTCCTGATNAGGTTGATACGCCTGATTTGCGGTTAGAGGCAAAATTGTCAGCTGAGGAAAATTCGAGGATGTTTGCAGGACGGCAGATGCATCCATTTTTTTCGTTGTGGAAAGCGGAGAAGAAAGTTCAGGAGGTGTCTGAATTTGGAAGCAATTTATGCAAAGCGAAGAGCGGGGATGAAAGGGTTACCTGTGGTCCTATTCATGTATTTGAAAATTTTAAGGATNATACCTCATCCCTTGACTGGAGAAACTGGACATTTTTGGAAAATACCACCTTTGCGAACCATGGTCCAGAAAGTTCACATTCATCTGTTTTGGAGGGTTCTGTTGAATCCTTAAATTTTGTTAAGCTTCTTAGTACTTCGGATCCATCAGGGGCTTCATTTTTTCAGAATGCCTTGTCTTCTTCAGATAGATTTTCTATACATCCAGAAAATCTGCAAGAAACATCACCGTCAAACTCAACTTCACTAGAGGAGCAAACAACAAGTCCTCAGATACCAAAAGATGCCAAAGTGGACTTGGAGGTCGATGAATCTGTAANTTTTTCTGTGCTAGCGGGCTATTTTAGAAAGCCAGATACCGAGCCACTGAATAGATTTCTTCAAGAAAGTATGAGGTCATACTACAACAGTTGTGAAGATAAGGCTGAAGGCAGCTTATGGATATACAAATACAAGCCAACAAAAGCTGTCCAGGTATGTGGTAATGATGAATCTGTGAATTTCTTGCATGACTGGCTACATCAGTGGCATGAAAGNCGTTATCGAAGCAGGAAGGATACGTCTGATAGGGATAAAAGTGACATGCAAGATGATGATGATGATTATATCTGTTCACATAGTGACTACGATTCAGAGGATATGAANGAGGAGGACTCCCTGCAGAATGTTCTTTTAATTACGGGACCAATAGGGAGTGGCAAATCTGCAGCNGTCTATGCTTGTGCCCAAGAGCAAGGGTTTGAGATTTTAGAGCTCAATGCATCAGATTGTAGAAATGGAAATGTTGTCAAGCAGTCATCAGAACACACTGCACGTTCACAGAAGATATCTACAAAATTGTCCCCTGCTCTNGCTTTGGTTAATAATAAAACTGCTGATGAGGTGAATGATGGGGTGGTTGAACTGATAACCATATCTGATGATGAAGCTCATAGCCCTGGTGGAACATCACAGAAGTTACTGNGCAAAAATATCGTTGCATGTGAAAAAGTCCAAACTTTAATTCTAGTTGANGATGTGGACATCCTTTTTCCTGATGATCGTGGATGTATTGCTGCCATACAACAGATTGCCGAGACAGCAAAGGGACCAATTATATTGACCAGCAATAGTGATAATCCTGGCCTGCCAGATAATTTTGATAGGCTTCATCTTTCGTTCTCATTGCCATCGCCAAAGGAGTTGCTTTGCCATTTGTACACAGTTTGTCTCACAGAAGGGGTCAACATCCATCCTCTTTTACTGGAGAAGTTTATACAGTCTTGTGATGGAGATATCCGAAAAACCNTAATGCATCTTCAGTTCTGGTTGCAGAGCAAAAGATTTATAAAAGGCTATGGCTCACTTCNATTTGATCTTGAGGTTGGTCATCAGATACTACCAAAGATAATGCCCTGGGATTTCCCCTCAGAGATATCCGAACTAATTGAGAATGAATTTGCCAAATCAGCAAATATAATGGAAGAGAACTTTAGTTTGCAAGGGTTAGTTAAGGAAGAGGCTCTTCACATAAATGAAAAGCAAAATGATTTTGATGAGCAATATATGGAGACTGATTATATAAAAGCCAAGAAGGTGGAGATGATTCAGAGAAATGGATCTATAACAGATTACAGTGAGCTTGAAATTCAATACAGAGCTATTTCTGNGTTTTCCAATTCTTCTGGATCCCCAGTAGCATCCTCTCGGCAAAATGGTCGAAGGAAACTTATAGTAATGTCCTCTGATTCTGAGGATGAGGATTCAAACAATCGGTATCCTCTAGACACACATGATGAAGCTAACAAGAGACAATCCATCAAAGAAAATAATGACGGTCCTTCTGGGTTTGAATTGAATGAAAACCACCCCAGCACATCAGTTCGCAAAATGGTTTGTTCTGAATTGGAGGATTCAGAAGAGGAACATTTTTTTAAATATTCAAAAACAGCTGATGATACATGCTTAAATGAAACATCTAAATCATTTGATATATCCTGTGTGCCAGAATCAACGTTTGTTCCTGAGACTGCAATTGAAAGTGGAACAGAGACAATGTCTGGAGCAGTGTCTTCTGNCCATCTTGGTCCTCTAGAAGCTTATGTGAATGATGAGTTGAAACCATTCACTTCAAGTGTCCGCAAGCGCTTAACAAAATTGTCACACAATTCAGATTTGCTGGTGGATACTGAAATTTCAGATTCTTCTCCAAAAGAGGCTCTGCAAGATTTTCTAGATGAAAATATGGAATCTACAATTGTCAAGGTGATGGATGAGTGCAGTCGTGTGGATTTCAAACTAAAGTCAACATTTGTTGAGTCCAGCCCATCAATGGAGACAGATATGGTGCGAAATTTGTGGAAAGAACTCCGTGAGCGTCGAATTGATTTAGGACAGCATGCAACTACCTCGGAACAGTTAGGTGCTTTTCAAGTTGTTAAACTTGCTAGTGGGCTGAGCAATCTAATTTCAGAAGCTGATTTGTTTCATAATCACCAACATAAACGTGATATTCTGGATCCCCCAACGTTCCTTTCTGATGAAGCCACATCTAGTTGGTATAACGAGCAAATAATGATGTCCACTTTTGCTGTTCACGGGTTTTGTTTTTATGCTAAACTTATAGCAGATGTGGGATCAAAGTTGGGTGGTGCAGACAGGATTGATTTAACTTCTGAGATGTTGGCTTCCACAACNAATACCATGGCATTGGGGAAATTATCCAGACAGGATCTCACCAAAAGCACGGTCATCCAATCCGTTGTTCCTGCAAGAATATCCTTGACACTGAAAGGTGATACCTTCAATGAATATCTATCTTCATTGCGCCAAATTTCAAGGTCAGAAGCTTTCCGTATTTCACAAGCTGCTGAAAAGAAGAGAAGAGGAAGGGTACGGGGGACTCAACATTACTTGAGCAGATGCACAATGTTGTCTCCTGAAGATATATCTTTGGTGGGTGAGGGTGATTTGTACAGAAAGATTTCTTCACAATATACAACTAACATGGAAAGTAAACTATAA

Protein Sequence

>Glyur001932s00039791.1
MVGPVTELSPSCNAGTPAGRSVRRRLVQSTLFPHKPPEPRHKPDQNDDADDEQDDDDYIDTENXKKRKKPKAKATPPKKGPKSATPKKNSPANGIKGSTSQHVFAVPDXVDTPDLRLEAKLSAEENSRMFAGRQMHPFFSLWKAEKKVQEVSEFGSNLCKAKSGDERVTCGPIHVFENFKDXTSSLDWRNWTFLENTTFANHGPESSHSSVLEGSVESLNFVKLLSTSDPSGASFFQNALSSSDRFSIHPENLQETSPSNSTSLEEQTTSPQIPKDAKVDLEVDESVXFSVLAGYFRKPDTEPLNRFLQESMRSYYNSCEDKAEGSLWIYKYKPTKAVQVCGNDESVNFLHDWLHQWHEXRYRSRKDTSDRDKSDMQDDDDDYICSHSDYDSEDMXEEDSLQNVLLITGPIGSGKSAAVYACAQEQGFEILELNASDCRNGNVVKQSSEHTARSQKISTKLSPALALVNNKTADEVNDGVVELITISDDEAHSPGGTSQKLLXKNIVACEKVQTLILVXDVDILFPDDRGCIAAIQQIAETAKGPIILTSNSDNPGLPDNFDRLHLSFSLPSPKELLCHLYTVCLTEGVNIHPLLLEKFIQSCDGDIRKTXMHLQFWLQSKRFIKGYGSLXFDLEVGHQILPKIMPWDFPSEISELIENEFAKSANIMEENFSLQGLVKEEALHINEKQNDFDEQYMETDYIKAKKVEMIQRNGSITDYSELEIQYRAISXFSNSSGSPVASSRQNGRRKLIVMSSDSEDEDSNNRYPLDTHDEANKRQSIKENNDGPSGFELNENHPSTSVRKMVCSELEDSEEEHFFKYSKTADDTCLNETSKSFDISCVPESTFVPETAIESGTETMSGAVSSXHLGPLEAYVNDELKPFTSSVRKRLTKLSHNSDLLVDTEISDSSPKEALQDFLDENMESTIVKVMDECSRVDFKLKSTFVESSPSMETDMVRNLWKELRERRIDLGQHATTSEQLGAFQVVKLASGLSNLISEADLFHNHQHKRDILDPPTFLSDEATSSWYNEQIMMSTFAVHGFCFYAKLIADVGSKLGGADRIDLTSEMLASTTNTMALGKLSRQDLTKSTVIQSVVPARISLTLKGDTFNEYLSSLRQISRSEAFRISQAAEKKRRGRVRGTQHYLSRCTMLSPEDISLVGEGDLYRKISSQYTTNMESKL

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01932	37942	47197	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006281 DNA repair

GO:0007049 cell cycle

cellular_component
GO:0005634 nucleus

molecular_function
GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001932s00039791.1	PF00004.24	AAA	405	453	4.10E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.688
SRR1783600	control	1.599
SRR1783602	moderate drought stress	0.945
SRR1811619	moderate drought stress	0.887

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.049
DRR006520	Root Summer glycyrrhizin high producing strain	1.153
DRR006521	Root Winter glycyrrhizin high producing strain	0.485
DRR006522	Root Winter glycyrrhizin high producing strain	0.535
DRR006523	Root Summer glycyrrhizin low producing strain	0.725
DRR006524	Root Summer glycyrrhizin low producing strain	0.694
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.740
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.663

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.323
SRR2868004	Drought Stress (root)	1.985
SRR2967015	Control (root)	1.894

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.033
SRR9715740	Leaf	2.714
SRR9715741	Leaf	0.990
SRR9715739	Root	0.076
SRR9715742	Root	0.583
SRR9715743	Root	0.411

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.687
SRR8749028	MeJA induced 9h	4.230
SRR8749029	MeJA induced 9h	1.637
SRR8749030	Uninduced	0.146
SRR8749031	Uninduced	0.221
SRR8749032	Uninduced	0.268

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.090
SRR8400027	Control - Root	3.137