Gene detail

Gene detail information of Glyur001930s00032116

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G10200.1	2.00E-90	GATA type zinc finger transcription factor family protein
NR	AFK47041.1	4.08E-137	unknown [Lotus japonicus]
Swissprot	tr\|Q94JX5\|WLIM1_ARATH	2.00E-114	LIM domain-containing protein WLIM1 {ECO:0000305}
trEMBL	tr\|I3T3E9\|I3T3E9_LOTJA	2.00E-137	Uncharacterized protein {ECO:0000313\|EMBL:AFK47041.1}

Sequence

Transcript Sequence

>Glyur001930s00032116.1
GAAACATTAAAAAAGAAATATAAGAGNAAAAGTGTAGTTAGGTGCTTAAAATTTGATCAAAATGATTGTCACTGACATTATAATTGTTGGGAAGTCTGCTTTAGTCTCCAATTTTCTTCTCCTCCACTTTTTCCTTGTCTCCTTTTCAAAATCTTCATTATTGTCCAGTTCTTCCCCATTGTGACAAACCAAGGTACAAGAGAAAAACAGAACACACAGAGATCATAGACTGCTTGCAAGTTGGTGAGGTAAGGAAGAATGGCATTTGCAGGAACAACCCAGAAGTGTATGGCTTGTGACAAAACAGTTTATCTGGTTGATAAGTTAACTGCTGATAACCGAGTGTTCCACAAAGCTTGCTTCAGATGTCACCACTGCAAAGGAACCCTCAAGCTTAGCAACTACAACTCTTTTGAGGGAGTTCTTTACTGCAAGCCACACTTTGATCAACTGTTCAAAAGAACTGGTAGCCTTGACAAAAGCTTTGAAGGGACACCAAAGGTTGCCAAACCAGAAAGAAATAGCGATAATGAGAAACCTGCAGCAGCCAAAGTCTCAGGTATGTTTGGTGGAACCAGGGACAAATGTGCTGGTTGCCAGAAGACAGTGTATCCCACTGAGAAGGTTACTGTGAATGGAACCCCTTACCATAAGAGTTGCTTCAAGTGCTGCCATGGAGGGTGTGTTATCAGTCCTTCCAATTACATAGCACACGAGGGAAAACTCTACTGCAAACACCACCATATCCAACTGATCAAGGAGAAGGGCAATTTAAGCCAGCTCGAAGGCGACCATGAGAAGAATTCACTGCATGGGAAAATCAATGGTGAAGAAGTTGCTGCTGAAACATGATAAAAAGAGTCTTGAGTCTCAAAATTTTGGATTCTCAAGTTCCATAATTATGCACTGTGTTTCTGCTATCTGTCATGCTTTTACCATTACTTGTAGTCCGGGAAGCTATTTACCCGTGACAAATGTGGTATTCATATTTGTTATCAAGTGTGTGGATCTGTTGGACA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01930	19230	21232	+

Gene family

Gene family	subfamily
Transcription Factors Family	LIM

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001930s00032116.1	PF00412.17	LIM	10	64	1.80E-12
Glyur001930s00032116.1	PF00412.17	LIM	110	164	3.20E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	191.859
SRR1783600	control	192.581
SRR1783602	moderate drought stress	159.247
SRR1811619	moderate drought stress	158.129

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	185.654
DRR006520	Root Summer glycyrrhizin high producing strain	183.446
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	97.034
DRR006524	Root Summer glycyrrhizin low producing strain	97.454
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.098
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.839

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	107.976
SRR2868004	Drought Stress (root)	58.880
SRR2967015	Control (root)	68.254

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.901
SRR9715740	Leaf	1.200
SRR9715741	Leaf	3.308
SRR9715739	Root	22.093
SRR9715742	Root	46.207
SRR9715743	Root	38.345

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.094
SRR8749028	MeJA induced 9h	5.569
SRR8749029	MeJA induced 9h	6.967
SRR8749030	Uninduced	1.004
SRR8749031	Uninduced	1.804
SRR8749032	Uninduced	1.074

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	140.921
SRR8400027	Control - Root	198.933