Gene detail information of Glyur001930s00032112 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G27460.1 | 0 | no pollen germination related 1 |
| NR | XP_004498994.1 | 0 | PREDICTED: tetratricopeptide repeat protein 7B-like isoform X1 [Cicer arietinum] |
| COG | YP_007149026.1 | 4.00E-08 | tetratricopeptide repeat protein [Cylindrospermum stagnale PCC 7417] |
| Swissprot | tr|Q9M8Y0|SEC_ARATH | 2.00E-07 | Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC |
| trEMBL | tr|K7M5Q3|K7M5Q3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G09840.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01930 | 109 | 3988 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001930s00032112.1 | PF13181.1 | TPR_8 | 323 | 349 | 0.42 |
| Glyur001930s00032112.1 | PF00515.23 | TPR_1 | 680 | 708 | 0.0087 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 19.824 |
| SRR1783600 | control | 20.180 |
| SRR1783602 | moderate drought stress | 9.755 |
| SRR1811619 | moderate drought stress | 9.705 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.194 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.024 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.167 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.260 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.248 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.345 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.911 |
| SRR2868004 | Drought Stress (root) | 4.085 |
| SRR2967015 | Control (root) | 4.168 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.438 |
| SRR9715740 | Leaf | 0.638 |
| SRR9715741 | Leaf | 2.300 |
| SRR9715739 | Root | 2.156 |
| SRR9715742 | Root | 6.582 |
| SRR9715743 | Root | 7.713 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.919 |
| SRR8749028 | MeJA induced 9h | 2.056 |
| SRR8749029 | MeJA induced 9h | 2.053 |
| SRR8749030 | Uninduced | 1.181 |
| SRR8749031 | Uninduced | 2.391 |
| SRR8749032 | Uninduced | 2.163 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 28.637 |
| SRR8400027 | Control - Root | 21.635 |