Gene detail

Gene detail information of Glyur001929s00041466

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G17430.1	6.00E-124	O-fucosyltransferase family protein
NR	XP_003543971.1	0	PREDICTED: uncharacterized protein LOC100788337 [Glycine max]
trEMBL	tr\|I1LWT4\|I1LWT4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G06400.1}

Sequence

Transcript Sequence

>Glyur001929s00041466.1
ATGAATGCTTTGAATTCAGGCACACCTAATAGAATGTTGTCTAAAAGAAAACCGCCCCATTACAGATTGCCACTCATTCCTGTCTCTGTCCTTGTCATATTCCTCTCCTTCCTTTTTTTGTATTACCATTATATGAGACCTGATTCCAACTTCCCTGCATTGTCNCAAACCTTAACAACATCATCACAACATGCCCCTCAATGCTCCGGCCAAGCCCTCGCCTTAAGTGAGAAGTTTGTGTGGTACGCGCCTCACAGTGGGTTCAGCAACCAGCTTCTGGAGTTCAAGCACGCTGTCTTGATGGCGGGGATACTGAACCGGACTTTGGTTGTTCCTCCCATTCTGGAACACCATGCTGTTGCTCTAGGTAGCTGTCCCAAGTATATCTCCATTGCTGAAATTATAGACATCTCATCATTAGTTTCTTCCTCTCTCATCCGAGTGATCGATCTTAGGGATTTCGTGTCAATATGGTGTGGCATCAGCTTAGATTTGGCTTGCCTAAATGATTCGAAGTCACAGTCCTCCGTTTCTAAAAGCCTAAAGCAATGTGGATCTCTGCTAGCAGGGCTTCATGGGAATGTTGAAAAGTGTATACATGCTATCAATGAAGATTGCAGAACTACAGTGTGGACTTATCATGCAGACGGTCATGAGGATGNCACATTGGATTTGTTCCAACCTGATGAACAGCTGAAGCAGAAAAAGAAAATATCATATGTTAGGAGACGGAGAGATGTATTCAAGACTCTCGGACCCGGTTCCGAAGCAGAATCGGCCTCATTGTTGGCATTCGGAAGCCTTTTCTCTGCCCCATACAAAGGTTCCGAGCTGTATGTTGATATTCATGAATCTCATCAGAACCAGAGGTTTCTATCTCTGATGGAGAAGATTAAATTCATTCCATTCGTCCCGGAAATTATGATCGCCGGAAAGGAGTTTGCGAAAGCAACCATAAAGGCTCCTTTTCTCTGTGCACAACTTAGATTGCTGGATGGGCAGTTTAAGAATCATCACAAGGCTACCTTTAATGGGTTAAGGCAAAAACTGGAATCGTTGAGGCAGAAAGGCCCTCTACCCATAAACATTTTTGTAATGACTGATCTTCCTAGAGATAATTGGTCTGGTACTTATTTAGGTGATTTAGTTAGTGATGCACACAACTATAAGGTGCATTTCTTAAGAAAGGACGATGAGCTGGTTAGGCAAGCAGCCAAAAAACTCATGGCAGCTGGTCATGGACAGAGGTTCATTCCGAATTCGGATAATACAATCGGTAAGAAGCATTGTTCCAATCAGAGATTGCCTGACGTGCTTCTTTACGTCGAGCAGACTGTATGCAGTTGTGCATCTCTTGGTTTTGTTGGAACTCCTGGGTCAACCATTGCTGAAAATATAGAAGTAATGAGAAAATTTGGCTCTGGTTCTTTGCAAAGTTGACAACTACTTTTATTATAAGATGTTAAAAATGATGGAGTGCTGCTAAGTTCAATTGTGCTGTACCAGGAAGGAAAGGATTTTGCATAGGCTTTGTTCTGTTGAGTTCCAAAATTTTGACCATTAGTCAGCTATATGCCAAACCAGTTATTTGTTAGGAGACACTGTACAGTCAAGGGCATTGTTCTTGTTTTAGGTATGAAAAAGAAGGCTACTATGGCTGTTTGTTTCCAGTAAAACTAGGGGCGTGTGTTGGGAGTTTTAGAGAGGAGGGGAGGGGAGGGTTTGTGGTCAATATTTTACCTATTTGAGTGTTTAAAAAGTATGTGAAAACCCTTCAAAACCCTCCNANGTTACATTTCTAGTGCATTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01929	37738	40463	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GTnc

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001929s00041466.1	PF10250.4	O-FucT	84	356	6.70E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.733
SRR1783600	control	6.840
SRR1783602	moderate drought stress	4.434
SRR1811619	moderate drought stress	4.612

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.426
DRR006520	Root Summer glycyrrhizin high producing strain	10.439
DRR006521	Root Winter glycyrrhizin high producing strain	2.948
DRR006522	Root Winter glycyrrhizin high producing strain	2.941
DRR006523	Root Summer glycyrrhizin low producing strain	12.905
DRR006524	Root Summer glycyrrhizin low producing strain	13.319
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.615
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.545

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.483
SRR2868004	Drought Stress (root)	5.649
SRR2967015	Control (root)	4.392

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.277
SRR9715740	Leaf	6.189
SRR9715741	Leaf	8.552
SRR9715739	Root	8.916
SRR9715742	Root	12.201
SRR9715743	Root	10.709

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.548
SRR8749028	MeJA induced 9h	4.572
SRR8749029	MeJA induced 9h	3.925
SRR8749030	Uninduced	2.536
SRR8749031	Uninduced	2.256
SRR8749032	Uninduced	1.991

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.914
SRR8400027	Control - Root	5.904