Gene detail

Gene detail information of Glyur001928s00045024

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G62950.3	2.00E-20	RNA polymerase II, Rpb4, core protein
NR	XP_003552972.1	4.24E-52	PREDICTED: DNA-directed RNA polymerase III subunit RPC9-like [Glycine max]
trEMBL	tr\|K7MPS7\|K7MPS7_SOYBN	2.00E-52	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G04461.1} (Fragment)

Sequence

Transcript Sequence

>Glyur001928s00045024.1
AAAAATGTAACTTTAGAGAATTTTAGAGAATTTTTACATACTTTTTAAACACTTATAAAATATCAATCACACATCCTTCTCTCTCCTCCCTCTAAAAGTCCCAAATACACCCTAACTCTCTCTATTCTCTCTCTACCTCCCCTCTCAGGCTGCGCCTCCTCCCACCGCCCTGAACACAGCTGCCGTGAGCCACCGCCGTCCCACCCTTTGTCTCTAGCGCCTGTAAAGGAGAGGCCTTCTTTGCTCAGTGACTGCCTTTGTTCTCTCGGGTTTCTTGCAGATGAAAATGCCAATGCTGGTGCTTTGACGGATTTTGAGGTCCTTGATTTCTTACGAGCTAAAGGAGCTTCGAAAGATCCAACAATGGTTATTGCCAAAGTAGCACCATCCGAATACAAGGTTTATGATTATTTGGTTAATACTGCTGCCTCTGATCAAACAAGGGAGAACATCAATGAGTTCGTGACAAATGTTAAACAGCATGACCTGGCAAAAGCTGAGGTTCTGAACATACTAAACATTAGACCGGTTGCTGAAGTTGAAATATTCCCTATCATAGAGAATTGTGAGGACCGTTTTCCAGATGAAGTGATCGCTGAGATAGTAGAGCTGGTAAAGAAAACATTGCCGCCACCGCCTGATAAAACGAAGCCGGATGAAATCACCAACGGCGATGAAGAAACCGCAAAACTGAATCGTGGAAAAGGGAATGAGATTAGTCAAAGACAAAACTGAAGGTGGAGAACAAATGGACACAAGTTGAGAGCTAGTTATGACCACAGTATTTTATAAGTAACACCAGAGGATCTCAAGAATGTTGTTAGGTAATAATTTTCGGTGAGTCAGTGAAAATGAGTTTTATATGAAGTTTCATGCGGCTGTGTTACTTCCACAGGTAACTCTGGGGATGCAAATGCTGGCTTTGTTTATTGTGTTCTACAAATTCTGATTTTCTGAGTTCAAGAGGTGCATGATGTAGCAGTGGCGGACCTTGACTAAAATTTTGGGGAGAGCCACAAACTAGCTAGTAATTAAAATAATGTAATTAAAACTCATGCATCATATATATATATTTTATAAGCCAAAAGATGTATTAGATTTTTTATAAGCCAAAAAATGTATTAGATAGAGTATTAGGGATACTAAATACATATAGAGTAACATGCACTATATCCATGCTCCAGCTATTAGATAGCGATGCAGTATTTTTAGCCATCACTGGGAGTGATCGCACCACATCAAGATGAAACCAAAGATGGGATAAAAGTTAAAACAGAGCATCTATGTAGCAACCAACAAGAACACTATATACCAAACACAAATAATCAAATGTTTAGAGGGCAGCAGACCAACAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01928	42396	51636	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006351 transcription, DNA-templated

GO:0044237 cellular metabolic process

molecular_function

GO:0000166 nucleotide binding

GO:0003824 catalytic activity

GO:0003899 DNA-directed RNA polymerase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001928s00045024.1	PF03874.11	RNA_pol_Rpb4	9	87	4.30E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.937
SRR1783600	control	5.764
SRR1783602	moderate drought stress	13.306
SRR1811619	moderate drought stress	12.718

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.445
DRR006520	Root Summer glycyrrhizin high producing strain	8.653
DRR006521	Root Winter glycyrrhizin high producing strain	16.531
DRR006522	Root Winter glycyrrhizin high producing strain	17.217
DRR006523	Root Summer glycyrrhizin low producing strain	9.280
DRR006524	Root Summer glycyrrhizin low producing strain	10.161
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.116
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.919

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.654
SRR2868004	Drought Stress (root)	8.814
SRR2967015	Control (root)	10.074

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.287
SRR9715740	Leaf	0.730
SRR9715741	Leaf	2.112
SRR9715739	Root	0.506
SRR9715742	Root	0.549
SRR9715743	Root	0.783

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.583
SRR8749028	MeJA induced 9h	4.320
SRR8749029	MeJA induced 9h	5.066
SRR8749030	Uninduced	5.149
SRR8749031	Uninduced	4.412
SRR8749032	Uninduced	2.532

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.154
SRR8400027	Control - Root	4.803