Gene detail information of Glyur001925s00038515 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G17620.1 | 4.00E-30 | glycine-rich protein |
| NR | XP_004511747.1 | 6.82E-37 | PREDICTED: protein Dom3z homolog, chloroplastic-like [Cicer arietinum] |
| Swissprot | tr|Q8RY73|DXO_ARATH | 1.00E-35 | Decapping nuclease DXO homolog, chloroplastic (Precursor) |
| trEMBL | tr|G7JYM5|G7JYM5_MEDTR | 5.00E-36 | Dom3z-like protein {ECO:0000313|EMBL:AES94359.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01925 | 51512 | 53318 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | PPC:4.5.4 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001925s00038515.2 | PF00069.20 | Pkinase | 91 | 135 | 8.50E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 13.593 |
| SRR1783600 | control | 13.233 |
| SRR1783602 | moderate drought stress | 11.453 |
| SRR1811619 | moderate drought stress | 10.831 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 26.967 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 25.403 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 33.016 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 29.270 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 24.861 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 24.374 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.833 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.273 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.107 |
| SRR2868004 | Drought Stress (root) | 12.997 |
| SRR2967015 | Control (root) | 13.026 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.150 |
| SRR9715740 | Leaf | 6.203 |
| SRR9715741 | Leaf | 7.009 |
| SRR9715739 | Root | 2.053 |
| SRR9715742 | Root | 4.351 |
| SRR9715743 | Root | 3.239 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.868 |
| SRR8749028 | MeJA induced 9h | 6.030 |
| SRR8749029 | MeJA induced 9h | 3.513 |
| SRR8749030 | Uninduced | 5.805 |
| SRR8749031 | Uninduced | 5.155 |
| SRR8749032 | Uninduced | 11.283 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.238 |
| SRR8400027 | Control - Root | 6.239 |