Gene detail

Gene detail information of Glyur001924s00034864.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G17420.1	0	Cellulose synthase family protein
NR	XP_004509860.1	0	PREDICTED: cellulose synthase A catalytic subunit 7 [UDP-forming]-like [Cicer arietinum]
COG	NP_487797.1	5.00E-23	cellulose synthase catalytic subunit [Nostoc sp. PCC 7120]
Swissprot	tr\|Q9SWW6\|CESA7_ARATH	0	Cellulose synthase A catalytic subunit 7 [UDP-forming]
trEMBL	tr\|G7LFG6\|G7LFG6_MEDTR	0	Cellulose synthase {ECO:0000256\|RuleBase:RU361116}

Sequence

Transcript Sequence

>Glyur001924s00034864.1
ATGGAAGCTAAGACTGGACTTTTTGCAGGGTCTAATAACAGCAATGAGCTTTTGGTCATCCAAGGACGCGATGAGCCTAAGCCTAAGAAGAACTTAGATGGTCAACTTTGCGAGATATGTGGCGATTCCGTGGGGCTTACGGTGGATGGAGACTTATTTGTAGCTTGTGAAGAGTGTGGTTTCCCAGTTTGCAGGCCATGCTATGAGTATGAAAGAAGGGAAGGGACTCAAAATTGCCCTCAGTGCCATACAAGATACAAGCGTATCAAAGGAAGCCCAAGAGTGGAGGGTGATGAAGATGAAGATGATGTGGATGATATTGAACATGAATTTAAAATGGAAGAGGAAAGGTACAAGCTTAAGCATGAAGAGATGCTGCAAGGGAAGATGAACCATGGAGATGATGATGATGATGATGATGATGTGAATGCTAGATCAATACAGGTCAATGGGGAGCTTCCCATATCTTCTCACAGCATTGGAGAACATGCAGGTGGTGCAAAATTGGATTACAAGGAGATGCAGCAAGGCAATCTGTTAATTGAAACTGATGCCTCAGATGATCCTGAAAAGGCCATTCCTTATAGAATGATGGTCGCGGCTCGGCTCATCCTTCTTGTACTCTTCTTTCAGTACAGAATCTTCCACCCAGTGCCTGATGCAATTGGACTCTGGTTCACATCTGTAGTATGTGAAATCTGGCTTGCATTGTCATGGATGGTTGATCAGCTTCCCAAATGGTTTCCCATCGATCGCGAGACATACCTCGATCGTCTCTCAATCAGGTCCAACACTGTTCTTTCAGTATTGGCCTTGGATTATCCTGCTCACAAAATCTCATGCTACGTTTCTGATGATGGAGCTTCCATGCTCACCTTTGAAGCTCTTCAAGAAACCGCTGAATTTGCTCAAAAGTGGGTCCCCTTCTGCAAGAAATTCTCTGCAGAGCCTCGAGCACCCGAGAAGTACTTCTCTGAGAAGATAGATTTTATGAAGGAAAAGCTTCAGTCCACATATGTAAAAGAGCGCCGTACTATGAAGAGAGAATATGAAGAATTCAAGGTGAGAATAAATGCACTTGTGGCTAAATCCATGAGAGTTCCCCCAGAAGGGGAGAAAAGGCCTGCATTTCAACACCACAGCAAAGCTGGTGCAATGAATGCCCTGCTACGTGTATCTGCAGTTCTAAGCAATGCTCCTTTTGTGCTGAACTTGGACTGCAATCATTATATCAACAACAGCAAAGTAGTGAGAGAAGCCATGTGTTTCTTCATGGACATACAACTTGGGAATAGCATTGGCTTTGTCCAGTTTCCACTAAGATTTGACAGCCTCGATAGGCATGATCGTTATGCCAACAAGAACACTGTTTTATTTGATATTAACTTGAGGTGCCTAGATGGAATTCAGGGACCTGTTTATATTGGTTCAGGATGTATCTTCAGAAGGAAAGCTTTATATGGCTTTGATCCTGCAAAGCCATCAAAACGCCCACGAATAGTACAAGTGCACTCAAAACAAGATGAAAATGGAGAAGATGCAAGCATAACAGCACCAACAGATGAAGATAAGCAGCTATTGCAGTCACATATGAATGTTGAAAATAAGTTTGGAAACTGCAACATCATGGTTTTCAAAGTCTCCAAAACCGTGGGTTTGAGCTATGGATCTGTAGCAGCAGATATTCTGACAAGTTTCAAGATGCATTCACGTGGTTGGAGATCAGTATACTGCATGCCAAAGAGACCAGCTTTTAGGGGTACAGCTCCTATCAACCTCACAGAAAGACTCAACCAAGTGCTTAGATGGGCAGTGGGATCACTTGAGATCCTATTCAGCCGCCATTGCCCACTATGGTATGGTTTCAAGGAAGGAAGACTCAAGGGGCTCCAGAGGATTGCCTATATTAACAGCACTGTCTACCCCTTCAGCTCAATACCCCTCCTAGTATATTGTCTCATTCCTGCCATCTGCTTGCTCACTGATAAATTCATCACACCATCGGTAGGTACTTTTGCAAGTCTAATCTTCATTGCTCTTTTCATCTCAATCTTTGCATCTGCTATTCTTGAGTTGAGATGGAGTGGAGTAAGCCTAGAGGAATGGTGGAGAAACCAGCAATTCTGGGTCATTGGAAGTGTATCTGCACACCTCTTTGCCATCTTACAAGGCCTTATGGGAAGAGTCCTTGGTAGGTTCAATGCAAAAAACTTCAGCATTGTATCAAAGGCACCACAGGATGATGAGGGAGAGTTTCATGAGTTGTACACAATAAGATGGACAGCACTACTAATACCTCCAACCACAATCACAATAGTCAACCTCATTGGTATTGTGGCTGGTTTCACTGATGCCATAAACAGTGGTGGACACTCTTGGGGAGCACTTCTTGGGAAACTCTTCTTCTCTTTGTGGGTCATTGCTCATTTGTATCCATTCCTCAAGGGTCTTATGGGTAGGCAGAACAGAACACCAACTCTTATTGTCATTTGGTCTGTGCTTTTGGCTTCCATCTTCTCCTTGGTTTGGGTCAGAATGGACCCTTTTGTGTTGAAAACAAAGGGGCCTGATGTTAAGCAATGTGGAATTAGTTGCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01924	38804	45401	+

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Carbohydrate-Active enzymes Family	GT2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0030244 cellulose biosynthetic process

cellular_component
GO:0016020 membrane

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

GO:0016760 cellulose synthase (UDP-forming) activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001924s00034864.1	PF14569.1	zf-UDP	26	105	4.20E-44
Glyur001924s00034864.1	PF03552.9	Cellulose_synt	261	371	2.00E-53
Glyur001924s00034864.1	PF03552.9	Cellulose_synt	372	507	3.00E-68
Glyur001924s00034864.1	PF03552.9	Cellulose_synt	549	859	3.80E-150

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.608
SRR1783600	control	3.733
SRR1783602	moderate drought stress	6.122
SRR1811619	moderate drought stress	6.125

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.125
DRR006520	Root Summer glycyrrhizin high producing strain	0.148
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.042
DRR006524	Root Summer glycyrrhizin low producing strain	0.033
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.194
SRR2868004	Drought Stress (root)	14.707
SRR2967015	Control (root)	10.814

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.337
SRR9715741	Leaf	0.000
SRR9715739	Root	0.581
SRR9715742	Root	12.738
SRR9715743	Root	10.691

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	33.550
SRR8400027	Control - Root	47.270