Gene detail

Gene detail information of Glyur001920s00040142

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G57940.2	0	cyclic nucleotide gated channel 5
NR	XP_003540100.1	0	PREDICTED: probable cyclic nucleotide-gated ion channel 5-like isoform X1 [Glycine max]
COG	YP_006439308.1	7.00E-22	putative transcriptional regulator, Crp/Fnr family [Turneriella parva DSM 21527]
Swissprot	tr\|Q8RWS9\|CNGC5_ARATH	0	Probable cyclic nucleotide-gated ion channel 5
trEMBL	tr\|I1LT39\|I1LT39_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G23890.1}

Sequence

Transcript Sequence

>Glyur001920s00040142.1
CCATTTTTTCCCCCAATTTTCAACTTTACTTATTATTACTCTCTTTTCTTTCTCTTTTCCGGAGATTCCGCTGCAATCTATCTACCTCCTTCCCTCTTCCATTCAGGATCCCATTTTTTGCAGTCTCTATGATAAAGGTTATGTATTATATGATCATCAGTTGAAAGATGATTGACTGTGGTTACAAGTCACAATANGTTGGTGGTCAGCGGGAAAAATTTGTGAGGTTGGATGACTTGGATTCTAGACTATCTTCATCTTCTGATGCTGGAGTTAAAACATGTGGATTTAGTATTGATAAATTAAGCCATGGTGCCCATGGAAGCAGTACAACCTCTAGGTCTTTTAAAAGAGGAATGAGAAAGGGATCTGAAGGACTGAAGTCAATTGGCCGATCACTTGGATTTGGGGTATCTAAGGCAGTGTTCCCGGAAGATCTTAAAGTTTTAGAAAAGAAGATATTTGATCCTCAAGACAAATTTTTGCTCTTGTGGAATAAGCTTTTTGTTATCTCATGCATTTTGGCTGTTTCTGTGGATCCACTGTTTTTTTATCTCCCTGTCATCAATGATTCATTACTCTGTCTTGGTATAGACCGAAAGTTGGCAATTATAGTTACCACCTTGAGGACAATTATCGATGCTTTCTATCTTATACACATGGCTCTTCAATTTNGTACTGCTTATATTGCTCCATCATCTCGTGTTTTTGGACGTGGTGAGCTTGTAATAGATCCGNCACAGATAGCCAAACGATACTTACGGCGATATTTCATCATTGATTTCTTATCAGTGTTGCCCTTACCACAGATCGTGGTTTGGAGATTTCTTCAGAGGTCAAAAGGTTCAGATGTACTTGCAACAAAGCAAGCCTTGCTGTTCATTATCTTGCTTCAGTACATTCCTAGATTTCTCCGTATGGTACCACTGACTTCTGAACTTAAGAGAACAGCTGGNGTCTTTGCTGAAACTGCTTGGGCAGGTGCTGCATATTATTTNCTATTATTCATGCTCGCCAGTCATATAGTTGGGTCATTTTGGTACTTGTTAGCTGTTGAACGCAATGACTTTTGCTGGCAGAAGGCTTGTAGTGACAATGGGTACAACAAGAAATTCTTATATTGTGGTAACCAATACATGGAAGGTTATAGTGCCTGGCAAAACAGAAGTGAATCTATTCTTTCGTCACAGTGCTCTACAGATAATGATAACCCACCTTTTGACTATGGAATTTTCACACAAGCCTTGAAATCTGGTATTGTTTCATCTAAGAAGTTCTTTGTCAAGTACTGTTACTGTTTATGGTGGGGGCTCCAGAATTTGAGGGAAACTTTGTTAGAGATGATAGAGAACAAATCTGTTAGATGGGAAAGTTCAGAAGGAGAGAGGGATTCATGCTTACTGTTTATTCATTTATTTCACTNCAGTACACTTGGCCAGGGCCTTCAAACTAGCACCTATACTGGGGAGGTTATCTTTTCAATAGCACTAGCAATAGCCGGCCTTATCCTCTTTGCACTTCTGATTGGTAACATGCAGACATATCTTCAATCTCTTACCATTAGGCTTGAGGAAATGAGAGTCAAAAGGCGTGATTCAGAACAGTGGATGCATCATCGCTTGCTCCCACAAGAACTTAGAGAGCGTGTGAGACGATACGATCAATATAAGTGGTTGGCAACACGTGGTGTGGATGAAGAAAGTTTGGTTCAGAGTCTCCCAAAGGATCTTCAAAGAGATATTAAGCGCCACCTCTGTCTGGCTTTAGTGAGAAGGGTTCCACTATTTGAGAGTATGGATGAGAGATTGCTTGATGCCATATGTGAGAGACTGAAGCCATGTTTATTTACAGAGAATACTTANATTGTCCGGGAAGGAGATCCAGTTGATGAGATGCTTTTCATCATACGCGGTCGCCTCGAGAGTGTTACCACAGATGGTGGGAGGAGTGGATTCTTTAATCGNGGCTTTTTAAAAGAGGCGGACTTTTGTGGGGAGGAGCTTTTAACCTGGGCACTGGATCCCAAATCTGGCTCTAACCTCCCATCTTCTACTCGAACAGTTAAGGCTTTAACAGAGGTTGAGGCTTTTGCTTTAACTGCTGAAGAGTTGAAATTTGTTGCTAGTCAGTTTAGACGCCTTCACAGTAGACAAGTNCAGCACACATTCCGCTTCTACTCCCAACAATGGAGGACTTGGGCTGCAATCTTTATTCAAGCAGCATGGCGTCGGTATTCCAAACGTAAAATTATGGAGCTTCGACGAAAGGAAGAACCTGAGGAGTCTGAAGGAACTCGCAGCAATGCNGGTGGCAGTTCATACAGCCTTGGTGCCACCTTCTTGGCCTCGAGGTTTGCTGCNAATGCTCTTCGCGGTGTACACCGCAATCGGAATGCCAAGACTGCCAGGGAGTTGGTCAAACTACAAAAACCTCCAGANCCTGACTTCACTGCTGCTGATGATATGTAACTACTCTCTTATANAAGGCATGTTTTCATTGACTAACTATTTTGGTTGAACTCTTATAAAGTATTATACAATCATTCCAGTTGAGTTGTGATGATCTCAGGAGTTGTACTATGAGTCTTGTTCCTTGTAAATTAAACAGAAAGCCAAACTAGCTGTCATGCTAGGCCTGCCACAGAGAAGGCAATGAACTAACTGTTCAAAATATTATAAATTGTTGAGGTCATTCGTTGGCAGATGTGCAAGGGAAGTGAGATCGACATGCTTGTGATTTTTAAAGATTGGACCCACTTTTAGCATAGTTGAATAGTTAAAATGATAATTGGGCAATACGAGGGTATGCCACCTAATGTCCAAATATGTATTCACATTTGTATTTGTATTATTACTTGACGGATTTGATTTATCTAAAGTGAGATGAGAAATTCACTTTAGTGAAAAAGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01920	33614	49208	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006811 ion transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function

GO:0005216 ion channel activity

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001920s00040142.1	PF00520.26	Ion_trans	153	456	2.50E-17
Glyur001920s00040142.1	PF00027.24	cNMP_binding	560	655	2.80E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	22.389
SRR1783600	control	22.443
SRR1783602	moderate drought stress	15.979
SRR1811619	moderate drought stress	16.126

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	25.076
DRR006520	Root Summer glycyrrhizin high producing strain	24.678
DRR006521	Root Winter glycyrrhizin high producing strain	11.972
DRR006522	Root Winter glycyrrhizin high producing strain	11.393
DRR006523	Root Summer glycyrrhizin low producing strain	18.423
DRR006524	Root Summer glycyrrhizin low producing strain	18.180
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.761
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.710

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	33.851
SRR2868004	Drought Stress (root)	32.017
SRR2967015	Control (root)	28.789

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.559
SRR9715740	Leaf	10.785
SRR9715741	Leaf	11.149
SRR9715739	Root	8.959
SRR9715742	Root	21.041
SRR9715743	Root	18.403

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	22.233
SRR8749028	MeJA induced 9h	20.500
SRR8749029	MeJA induced 9h	12.257
SRR8749030	Uninduced	11.331
SRR8749031	Uninduced	5.859
SRR8749032	Uninduced	5.834

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	41.059
SRR8400027	Control - Root	41.032