Gene detail

Gene detail information of Glyur001919s00031510

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G69440.1	Argonaute family protein
NR	XP_006574922.1	PREDICTED: protein argonaute 7-like isoform X2 [Glycine max]
Swissprot	tr\|Q9C793\|AGO7_ARATH	Protein argonaute 7
trEMBL	tr\|K7K7Q1\|K7K7Q1_SOYBN	Protein argonaute {ECO:0000256\|RuleBase:RU361178}

Sequence

Transcript Sequence

>Glyur001919s00031510.1
ATGGAAGAGACAGAGGAGTCAACCAATAATGCTAACCAGAAATTCACCAGTACCAAAAGAAGGAGCTTTAAGAATGAAGGAGGAGCCAACAACTCTCATCATGAGCATCATCATCATCATCATCATCACCATCACTATCACTATTATCAGCAGCACCATCAACAGCTGCTGCTACAACAACACACAACTACAACAACAACAACTCAGCAGCAACTTGGGTTCTGCAACAACTACCAGAACAAGTATTATTATGAGAGGTACTATTACCCAGCTCCTCTTCTTCCTCTACCTTCTCTTATACCTCTTCAGCAACTACCTTTGACCCCACCCTTCCCTCAAAACCAGACCATCAAATCATCAAAAACCCACTTGCAGAAACCTCCATGCAAACTCAATAGTTCTCCCTCCTCAGATTACAAGCTCTCTGAAGAGCCACCACTTGCTCTTGTAAATTGGAAAAAAAATGATGACCCTCTTGTTTCACATACTGATTCAGCTCCAAAAAAGGAACTTGAACAGCAAACTAAGGCATCCTTTAAGGGAGATGATGATGGGAAGAAACTCATTCCAGCAACAAGGAAGCCACAAGCAGTAATTGTTGCAAGGAGACCAGACTCTGGTGGCAAAGAAGGTTCTGTTATCTCTCTCCTTGCCAACCACTTCTTGGTCAAATTTGATTCATCACAAAAGATATACCATTACAATGTTGAGATCACTCCTCATCCCTCCAAGGATGTTGCTAGAGCAATCAAACAGAAATTGGTAGATAACAATTCTGCTGTGCTCTTGGGCGCTCTACCGGCATATGATGGTAGGAAGAATCTCTACAGTCCAATTGAATTCCAAAATGATAAGCTTGAGTTCTACATAAGCCTCCCAATCCCCACTAGCAAATTGGCATCACCTTATGGAGAAATGTGTGACTTGAAAGAGAAGCATGAACAGCTTAAACTTTTCCGGATAAATATCAAACTAGTCTCAAAGATCAATGGGAAAGAGTTGAGTAACTACTTGAGCAAAGAGGGTGGTGATGACTGGATTCCACTTCCACAGGATTATCTACATGCATTGGACGTGGTTTTGAGGGAAAGTCCAACTGAGAAATGCATACCTGTAGGGAGGTCATTCTATTCGAGCGCAATGGGGAGAAGCAAAGACATTGGTGGAGGAGCTGTTGGATTGAGAGGCTTCTTTCAGAGTCTTAGACCAACCCAACAAGGACTAGCTCTCAATGTGGATTTCTCAGTAACTGCTTTCCACGAAAGCATAGGAGTCATTCCATACTTGCAGAAACGTCTTGAGTTTCTTCGAGACCTTTCTCAAAGGAAGACAACTCAGTTAACTAGTGAAGAAAGGAAGGAAGTGGAGCAGGCATTGAAGAACATCAGGGTCTTTGTTTGCCACAGGGAAACCGTTCAGAGATACCGTGTCTATGGCTTAACTGAGGAGGCTACTGAAAATCTTTGGTTTGCTGATAGAGATGGAAAGAATCTGAGGCTTGTGAGTTACTTTAAAGATCACTATAACTATGACATACAGTTTAGGAAGTTGCCATGCTTGCAAATTAGTAGGAGTAAACCTTGTTATCTCCCTATGGAGCTATGTGTGATCTGTGAAGGCCAGAAGTTCCTTGGGAAACTGTCTGATGATCAGACAGCAAGAATACTCAAGATGGGCTGCCAAAGACCGGGAGAACGAAAAGCCATCATTGAGGGAGTCATGAGAGGAAATGTTGGACCTACCAGTGGTGACCAGGAAAAAGAATTCAAACTCCAAGTCTCAAGGGAAATGACAAGGTTGACTGGGAGAATTCTTCACCCTCCCAAGCTAAAGCTTGGAGATGGAGGTCATGTGAGAAACCTGACCCCTTCGCGTCATGATCGCCAGTGGAACCTTCTGGATGGCCATGTCTTTGAAGGAACTACAATTGAAAGGTGGGCACTGATAAGTTTTGGGGGAACACCAGAGCAGAAGTCCAATATCCCCAGATTCATAAACCAGTTATCTCAAAGGTGTGAACAATTGGGCATTTTGCTTAACAAGAACACAGTCATTAGTCCCCAGTTTGAATCAATCCAGGTTCTTAACAATGTCACACTTTTGGAATCCAAGCTCAAGAGGATCCAGAGGGCTGCATCAAACCATCTCCAGCTCCTTGTTTGTATAATGGAGAGAAAACACAAAGGGTACGCGGACTTGAAGCGAATTGCTGAGACAAGTGTTGGTGTTGTTAGCCAATGCTGCCTGTACCCGAATCTCAGCAAATTAAGTTCACAGTTTCTGGCCAATTTGGCCCTCAAAATCAATGCCAAAGTTGGTGGATGCACGGTAGCCTTGTACAACTCGCTGCCTTCTCAAATACCGCGCCTCTTTCATGTCGACGAGCCAGCAATATTCATGGGAGCTGATGTGACACACCCTCACCCTCTTGATGATTCAAGTCCATCTGTTGCAGCTGTTGTTGGTAGCATGAATTGGCCAACAGCAAACAAGTACATCTCAAGAATAAGGTCTCAAACACACAGACAAGAAATCATCCCGGAACTCGGTGCAATGGTTGGGGAATTGCTTGATGATTTTCATCATGAAGTGGAGAAACTCCCCAACAGAATAATCTTCTTCAGAGATGGGGTCAGTGAAACACAATTCTACAAGGTGATGCAAGAGGAACTTCAATCCATAAGGCATGCATGTTCAAGGTTTCCTAGTTACAAACCTTTCATTACTTTTGTAGTTGTGCAGAAGAGGCATCACACAAGGTTGTTTCCCTTTGAAACTGACCAGTCTTCTTCCCCTCACAACAACCATAATTCTCTGTATGAAAACATTCCCCCAGGGACTGTGGTTGATTCTGTGATTACTCACCCAAAGGAATTTGATTTCTATCTATGTAGCCATTGGGGTGTGAAGGGAACAAGCAGGCCAACACATTACCATGTCTTGTGGGATGAGAACCAGTTCACTTCTGATGAACTTCAGAAGCTGGTTTACAACTTGTGCTACACTTTTGTTAGGTGTACCAAGCCAATTTCTTTGGTTCCTCCTGCATATTATGCACATTTAGCTGCATATAGAGGTAGACTCTACCTTGAGAGATCAGAGTCCTTAGGCTTGTTCAGAAGTGCTTCTACATTATCAAGAGCTGCTCCTCCAAAGACAGCACCTCTTCCTAAACTTAGTGAAAACATCAAGAAGCTGATGTTCTACTGCTAG

Protein Sequence

>Glyur001919s00031510.1
MEETEESTNNANQKFTSTKRRSFKNEGGANNSHHEHHHHHHHHHHYHYYQQHHQQLLLQQHTTTTTTTQQQLGFCNNYQNKYYYERYYYPAPLLPLPSLIPLQQLPLTPPFPQNQTIKSSKTHLQKPPCKLNSSPSSDYKLSEEPPLALVNWKKNDDPLVSHTDSAPKKELEQQTKASFKGDDDGKKLIPATRKPQAVIVARRPDSGGKEGSVISLLANHFLVKFDSSQKIYHYNVEITPHPSKDVARAIKQKLVDNNSAVLLGALPAYDGRKNLYSPIEFQNDKLEFYISLPIPTSKLASPYGEMCDLKEKHEQLKLFRINIKLVSKINGKELSNYLSKEGGDDWIPLPQDYLHALDVVLRESPTEKCIPVGRSFYSSAMGRSKDIGGGAVGLRGFFQSLRPTQQGLALNVDFSVTAFHESIGVIPYLQKRLEFLRDLSQRKTTQLTSEERKEVEQALKNIRVFVCHRETVQRYRVYGLTEEATENLWFADRDGKNLRLVSYFKDHYNYDIQFRKLPCLQISRSKPCYLPMELCVICEGQKFLGKLSDDQTARILKMGCQRPGERKAIIEGVMRGNVGPTSGDQEKEFKLQVSREMTRLTGRILHPPKLKLGDGGHVRNLTPSRHDRQWNLLDGHVFEGTTIERWALISFGGTPEQKSNIPRFINQLSQRCEQLGILLNKNTVISPQFESIQVLNNVTLLESKLKRIQRAASNHLQLLVCIMERKHKGYADLKRIAETSVGVVSQCCLYPNLSKLSSQFLANLALKINAKVGGCTVALYNSLPSQIPRLFHVDEPAIFMGADVTHPHPLDDSSPSVAAVVGSMNWPTANKYISRIRSQTHRQEIIPELGAMVGELLDDFHHEVEKLPNRIIFFRDGVSETQFYKVMQEELQSIRHACSRFPSYKPFITFVVVQKRHHTRLFPFETDQSSSPHNNHNSLYENIPPGTVVDSVITHPKEFDFYLCSHWGVKGTSRPTHYHVLWDENQFTSDELQKLVYNLCYTFVRCTKPISLVPPAYYAHLAAYRGRLYLERSESLGLFRSASTLSRAAPPKTAPLPKLSENIKKLMFYC

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01919	43839	48661	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001919s00031510.1	PF08699.5	DUF1785	370	421	1.70E-19
Glyur001919s00031510.1	PF02170.17	PAZ	431	561	2.80E-29
Glyur001919s00031510.1	PF02171.12	Piwi	719	1029	1.10E-90

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.510
SRR1783600	control	5.486
SRR1783602	moderate drought stress	21.034
SRR1811619	moderate drought stress	20.980

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.755
DRR006520	Root Summer glycyrrhizin high producing strain	4.697
DRR006521	Root Winter glycyrrhizin high producing strain	0.208
DRR006522	Root Winter glycyrrhizin high producing strain	0.220
DRR006523	Root Summer glycyrrhizin low producing strain	4.504
DRR006524	Root Summer glycyrrhizin low producing strain	4.566
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.723
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.718

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.125
SRR2868004	Drought Stress (root)	11.671
SRR2967015	Control (root)	12.384

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.002
SRR9715740	Leaf	1.491
SRR9715741	Leaf	1.079
SRR9715739	Root	2.010
SRR9715742	Root	6.150
SRR9715743	Root	5.847

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.022
SRR8749028	MeJA induced 9h	7.654
SRR8749029	MeJA induced 9h	0.735
SRR8749030	Uninduced	0.533
SRR8749031	Uninduced	0.068
SRR8749032	Uninduced	0.052

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.473
SRR8400027	Control - Root	4.879