Gene detail information of Glyur001916s00041249 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G33495.1 | 1.00E-164 | Ubiquitin carboxyl-terminal hydrolase family protein |
| NR | XP_004515715.1 | 0 | PREDICTED: uncharacterized protein LOC101508853 isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q689D6|RPD1_ARATH | 0 | Protein ROOT PRIMORDIUM DEFECTIVE 1 |
| trEMBL | tr|A0A072UIR4|A0A072UIR4_MEDTR | 0 | Plant organelle RNA recognition domain protein {ECO:0000313|EMBL:KEH25700.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01916 | 42806 | 44176 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001916s00041249.1 | PF11955.3 | PORR | 51 | 393 | 3.00E-120 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.247 |
| SRR1783600 | control | 11.201 |
| SRR1783602 | moderate drought stress | 12.284 |
| SRR1811619 | moderate drought stress | 12.367 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.259 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.126 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.320 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.087 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.392 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.857 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.664 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.704 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.882 |
| SRR2868004 | Drought Stress (root) | 10.554 |
| SRR2967015 | Control (root) | 10.520 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.371 |
| SRR9715740 | Leaf | 5.497 |
| SRR9715741 | Leaf | 4.349 |
| SRR9715739 | Root | 6.100 |
| SRR9715742 | Root | 7.744 |
| SRR9715743 | Root | 7.036 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.582 |
| SRR8749028 | MeJA induced 9h | 6.433 |
| SRR8749029 | MeJA induced 9h | 3.464 |
| SRR8749030 | Uninduced | 1.132 |
| SRR8749031 | Uninduced | 1.187 |
| SRR8749032 | Uninduced | 0.783 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.719 |
| SRR8400027 | Control - Root | 9.751 |