Gene detail

Gene detail information of Glyur001916s00041246

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G14470.1	0	NB-ARC domain-containing disease resistance protein
NR	AES69845.2	0	LRR and NB-ARC domain disease resistance protein [Medicago truncatula]
COG	YP_001660791.1	2.00E-14	apoptotic protease-activating factor 1 like [Microcystis aeruginosa NIES-843]
Swissprot	tr\|Q9LRR4\|R13L1_ARATH	0	Putative disease resistance RPP13-like protein 1
trEMBL	tr\|G7J117\|G7J117_MEDTR	0	LRR and NB-ARC domain disease resistance protein {ECO:0000313\|EMBL:AES69845.2}

Sequence

Transcript Sequence

>Glyur001916s00041246.1
ATGGCTGCAACTTTGGTTGGAGGTGCATTCCTCTCTGCTTCTGTTCAGACCATGATGGACAAACTGACTTCAACAGAGTTTCGTGATTACATCAACAACAAGAAGTTGAATGTCTCACTCTTGAAGCAGTTAGAAACAACATTGCTCACTCTTCAGGTTGTGCTGGATGACGCAGAGCAGAAGCAGATCAACAATCCTGCTGTCAAAAAATGGCTTCATGAGTTGAAGGATGCAATCTATGATGCAGAGGATTTGCTCGACCAAATCAGTTATGATTCCCTGCGATGCAAGGTGGAGAATACCGAAGCTGAAAACATCACCAACCAGGTGTGGAACTTCCTTTCATCCTCATTTAACATCTTCTATAGAGAGATCAATTCCCAAATGAAGAATATGTGTGAAAGGCTGCAATTTTTTACACAACAGAGAGACATCCTTGGCTTGCAAAATGCAAGTGGGAGGGTTTCTCGAAGAACGACTACAGATTCAACAGTAGATCAATCTGTTATGGTTGGTAGGGAGGATGATAAAAAAAAACTAATCAATATGTTGCTACCAGGCAGAGACGGGGACACAGGAAATAATAATAATATAGGTGTTATTGCAATTTTAGGCATGGGAGGTGTTGGTAAAACAACCCTTGCTCAACTTCTTTACAACAATAAAGAAGTTCAAGAACATTTTGATCTAAAGGCTTGGGCTTGCGTGTCAGAGGATTTTGATATTTTCAGAGTTACCAAAACTCTCCTCGAGTCTGTCACTTCAAGAGTTTGGGAAACCAATAATCTTGATCTTCTTCGAGTTGAGTTAAAGAAAAACTTGAGGGACAAAAGATTTTTGTTTGTGTTGGATGATCTATGGAATGACAATTATAATGATTGGCATCAATTAGTAACTCCCTTCATTGATGGTAAATCTCGAAGCAGGGTGATCATCACAACACGCCAACAAAGGGTTGCAGAAAATGCGCACACATTTCCCATTCATCAATTAGAACCTCTGACAAACGAAGACTGCTGGACTTTACTCTCCAAGCATGCATTTGGCGGAGAAGACTTTGGCTGCNGTAAGTACCAAAATCTAGAAGCAATTGGTAGGAAGATTGCAAGAAAGTGTGGCGGATTGCCAATAGCCGCCAAAGCACTTGGAGGACTTCTACGTTCAAAGGTAAATGCAAAGGAGTGGGATGCAATCTTGAACAGTGAGATATGGAACTTTCCAAATGATAATATTGTTCTACCTGCTTTGCTTTTGAGTTATCAATATCTTCCCTCTCATTTGAAAAGATGTTTCGCTTATTGCTCAATTTTTCCTAAGGATTATCCACTTGATAGGAAAAAATTGGTTTTATTGTGGATGGCAGAAGGCTTCCTTGAACATTCTCAAGGCGAAAAGGCAGCGGAGGATGTAGGTGACGACTGCTTTGTTGAATTATTATCGAGATCCTTAATTCAACAATTGAGTGATGATTTGGGAAGACAAAAGTTTGTCATGCACGACCTTGTCCATGATTTGGCTACTGTTGTATCAGGAAAAAGTTGTCGCCGGCTTGAATGTGATAACATCTCTGAAAATGTTCGCCATTTGTCATACAACCAAGAAGAGCATGACACTTTTAAAAAGTTTAAGATTTTATCCAATTTCACATGCTTGCGAACCTTCCTACCTATTGGCCAACGGTGGATAATATATTACTTATCTAGAAAAGTGGTTGATGATTTGCTACCCACACTCAAAAGGTTGCGTGTGTTATCTCTATCAAATTATAACAATGTCACCGTGCTACCGGACTCGGTTGGTAGTTTGGTGCAGTTGCGGTATTTGGATCTCTCCTATACTNACATCGAAAGCTTGCCTAATACAACATGTAACCTTTACAATTTGCAAACCTTGATTTTATCAGGGTGTGGAAATCTCACTAAATTGCCGATACACATCGGAAAATTAATTGAGTTACGTCACCTTGATATCNGTGGGACAAACNTAAAGGAGATGCCGAAGCAAATTGTTGGATTGGAGAACCTTCAAACTCTAACTGTCTTTGTAGTGGGCAAGCAAGAAGTTGGGTTAAGTGTGGGAGAGCTTGCGAAGTTTCCTAACCTACGGGGAAAACTTTGCATCAAGAACCTGCATAATGTCATTGATGCCACTGAGGNGTATGACACCATCTTGAAGAGCAAAGAACAAATTGAGGAGTTAGAGCTATATTGGGGAGAACAAACTGAGGACTCACGAACAGAGAAAGCTGTGCTTGATATGCTGCATCCATCAACAAATTTGAAAAAATTAACCATTGACTTGTATGGAGGGACAAGCTTTCCGAGCTGGTTGGGAGATTCTTTGTTTTCTAACATGGTATACCTCCGCATCAGTAACTGTGATTATTGCGTAACACTTCCACCTCTTGGGGAATTACCTTCACTCAAGGACCTAATGATAGATGGTATGGAGATATTGGAGACAATTGGTCCAGAGTTCTATGGCTTGGCAGTAAGAGGTTCAGCTTCTTCATTCCAACCATTTCCGTCCCTCGAGAGTTTGGAATTCACCCGCATGCCTAATTGGAAGGAATGGCTTCCCTTTGAAGGTGACAAATTTCCCTTTCCTCNTCTTAAAAAATTGACTTTAAGTTATTGCCCCATACTGAGGGGACATTTGCCTAGTCATCTTTCTTCCATAGAACATTTTGAAGTAGATGGTTGTGATCGTCTACTGGCAACACCACCTACTCTGCATTGGCTCTTGACAATGAAAAAACTAAATATTGTGGGACATTCAAATTCCGAAGGGTCTACTGAAAATACCCAATGGTCGTTGTTTGGCAGAGATTCTCCGTGTCTCCTGCAGCACGTATCGATGAGGCAGTGTGATACACTAGTGGCTCTGCCTAAAATGATTTTGACCACCACTTGTCTTCAACACTTGGANCTNNNNGGTGTCCCGTCTCTCACTGCNTTTCCAGCAGATGGTCTACCCACNTCATTGCANTCACTTGAAATTCNNGNTTGTGAGAATTTAGCATTCCTGCCTCCTGAAACGTGGAGCAATTACACATCNCTTGTNACTTTGAAGTTATACAATAGTTGTGNTGCACTNACCTCCTTCCCACTGGATGGTTTCCCTGTGCTCCAACGTCTTTCCATAGTGAGCTGTAGGAGATTGGAATCCATTTTTATTTCAGAAAGTTGTTCNCTTCACCATTCAACCCTNCAATNNCTTTGNGTNTNTTCTTGTAAGGCACTTAGATCACTGCCTCAACGAATGAACACCCTCACAGCTCTTGAAGACTTGACTCTTGCAAATCTTCCAGAACTAGAGTTGTCATTTTGTGAAGAAGCTAGCCTGCCTCCCAAATTACAATCAATTGATATTCGACTCGTAAGAGTAACAACACCTTTAACTGGATGGGGTCTTCAGCGCCTGACTGCTCTTTCACGGTTGGAAATTGGTGGTGATGATAATGTGAAGACCATGCTGAAAGAGCAGTTGTTGCCCGTTTCCCTCGTGTCTCTGACAATCACTCATCTCTCTGAAATGCAATCCTTACAAGGAAATGGGCTTCGACACCTCTCCTCTCTGGAAACCCTTCTGTTTAGTCAATGTTCAGTGCTTGAGTCTTTGGCAAGAGACGCGCTGCCTTCCTTTCTGAAATTTCTTATGTTTCATGATTGTCACAGACTTGAGTCATTGCTAGAGGACACATTGCCTTCCTCTCTAGAAACCCTCTATTTTTTAGAATGTCCCAGACTAAAGTCTTTGCCAGAAGACAGGCTCCCTTCCTCTCTTAAGCTACTGCGCATTTGGTTCTGCCCTCTATTAGAAGCAAGGGCTCCTCCTAATTTGCTGAGATTTTCAAATTTCAAATCACTGGATGGGTCTAAGGCGTGGTTTCACAAATCTCAACCCAAAGCCAATAATCAATATCTGGCTGCGCACATGTATATGTCGGTGGATGTCAATGNTAATGCCTACACAGATTTGGTTCAGCTTATCATTTGATCTCTTAAAGAAGCAGCAGCTAGCAATTGATTGATTGAAGCTGGAAGCTGTTCACAAAGAGAGTATTGTTTCAGACAGCCAAGAAAGTGCCTTTTACTGTTTGATCAGTTTGTAGCAACTAGAACAATCTATAATATTCCTCTGCAGCATAGACAAAAGCTTTGCAAGCTCAAAGACTTCTCCATGCTGCATGTATCTCTCATCTTTTGAGTTTTTAATGTCCCATATGTGTGCTACTGCTACATTTGTCTGGTGTAGAATCCGGATGGATNATCAATTAGTTAATTAGTTAGGATATGTCTTATTGTATAGCTATGTGATATGTGATTTAATCTTGCAGTTAGCAGTTACATGGGAAGTTGTTGTAACTGTTTTCTAACAGATTTGGGGATTGGGAAACCGCATATATAAGTCATAGCTTGCTAGGTGCTTCAGAACACAGTGTAACAGTGTGATTCATTTGTAGATTGTTGTGAGTGCAAGTGAGGATAGCATAGCTTACCTGAAAACTGTACTTGTACTGGTTTGTGATCTGAAAACGAAGAAGGTGCTCGACTCAGTGTGGACGTAGGAGAGTTTGCTCCGAACCACGATAATTCCTTTGTGTTCTCTTCTTTTCTCATCTCTTCTTTCTGCACAATTCAGTTTTCTCTTGAGTATTAGTCTTTGATCAAATCATAACAGTCTGGCATTAT

Protein Sequence

>Glyur001916s00041246.1
MAATLVGGAFLSASVQTMMDKLTSTEFRDYINNKKLNVSLLKQLETTLLTLQVVLDDAEQKQINNPAVKKWLHELKDAIYDAEDLLDQISYDSLRCKVENTEAENITNQVWNFLSSSFNIFYREINSQMKNMCERLQFFTQQRDILGLQNASGRVSRRTTTDSTVDQSVMVGREDDKKKLINMLLPGRDGDTGNNNNIGVIAILGMGGVGKTTLAQLLYNNKEVQEHFDLKAWACVSEDFDIFRVTKTLLESVTSRVWETNNLDLLRVELKKNLRDKRFLFVLDDLWNDNYNDWHQLVTPFIDGKSRSRVIITTRQQRVAENAHTFPIHQLEPLTNEDCWTLLSKHAFGGEDFGCXKYQNLEAIGRKIARKCGGLPIAAKALGGLLRSKVNAKEWDAILNSEIWNFPNDNIVLPALLLSYQYLPSHLKRCFAYCSIFPKDYPLDRKKLVLLWMAEGFLEHSQGEKAAEDVGDDCFVELLSRSLIQQLSDDLGRQKFVMHDLVHDLATVVSGKSCRRLECDNISENVRHLSYNQEEHDTFKKFKILSNFTCLRTFLPIGQRWIIYYLSRKVVDDLLPTLKRLRVLSLSNYNNVTVLPDSVGSLVQLRYLDLSYTXIESLPNTTCNLYNLQTLILSGCGNLTKLPIHIGKLIELRHLDIXGTNXKEMPKQIVGLENLQTLTVFVVGKQEVGLSVGELAKFPNLRGKLCIKNLHNVIDATEXYDTILKSKEQIEELELYWGEQTEDSRTEKAVLDMLHPSTNLKKLTIDLYGGTSFPSWLGDSLFSNMVYLRISNCDYCVTLPPLGELPSLKDLMIDGMEILETIGPEFYGLAVRGSASSFQPFPSLESLEFTRMPNWKEWLPFEGDKFPFPXLKKLTLSYCPILRGHLPSHLSSIEHFEVDGCDRLLATPPTLHWLLTMKKLNIVGHSNSEGSTENTQWSLFGRDSPCLLQHVSMRQCDTLVALPKMILTTTCLQHLXLXGVPSLTAFPADGLPTSLXSLEIXXCENLAFLPPETWSNYTSLVTLKLYNSCXALTSFPLDGFPVLQRLSIVSCRRLESIFISESCSLHHSTLQXLXVXSCKALRSLPQRMNTLTALEDLTLANLPELELSFCEEASLPPKLQSIDIRLVRVTTPLTGWGLQRLTALSRLEIGGDDNVKTMLKEQLLPVSLVSLTITHLSEMQSLQGNGLRHLSSLETLLFSQCSVLESLARDALPSFLKFLMFHDCHRLESLLEDTLPSSLETLYFLECPRLKSLPEDRLPSSLKLLRIWFCPLLEARAPPNLLRFSNFKSLDGSKAWFHKSQPKANNQYLAAHMYMSVDVNXNAYTDLVQLII

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01916	4494	9860	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001916s00041246.1	PF00931.17	NB-ARC	194	462	8.10E-79
Glyur001916s00041246.1	PF13855.1	LRR_8	580	636	1.90E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.658
SRR1783600	control	3.413
SRR1783602	moderate drought stress	6.473
SRR1811619	moderate drought stress	6.561

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.795
DRR006520	Root Summer glycyrrhizin high producing strain	1.780
DRR006521	Root Winter glycyrrhizin high producing strain	2.164
DRR006522	Root Winter glycyrrhizin high producing strain	2.313
DRR006523	Root Summer glycyrrhizin low producing strain	3.048
DRR006524	Root Summer glycyrrhizin low producing strain	2.921
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.245
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.256

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.350
SRR2868004	Drought Stress (root)	10.482
SRR2967015	Control (root)	7.256

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.185
SRR9715740	Leaf	2.325
SRR9715741	Leaf	1.213
SRR9715739	Root	1.785
SRR9715742	Root	3.272
SRR9715743	Root	2.575

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.471
SRR8749028	MeJA induced 9h	3.757
SRR8749029	MeJA induced 9h	2.066
SRR8749030	Uninduced	3.072
SRR8749031	Uninduced	0.648
SRR8749032	Uninduced	0.731

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.125
SRR8400027	Control - Root	8.126