Gene detail

Gene detail information of Glyur001913s00040942

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G51050.1	3.00E-113	Mitochondrial substrate carrier family protein
NR	XP_003553987.1	0	PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-1-like [Glycine max]
Swissprot	tr\|Q52T38\|ZDH22_ARATH	1.00E-97	Protein S-acyltransferase 24
trEMBL	tr\|I1N833\|I1N833_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G28020.1}

Sequence

Transcript Sequence

>Glyur001913s00040942.1
ATGAAGAGGCTTTTAATAACCTTAATTCATTCAGGTTGCACTCCTCTACATTGGGCTGCTATTAAGCGTAACTTGGAGGCTTATACTTTGTTAGTAATGGGTGCCAAAAAGGAAGACTTGATGCTGACTGACAATACTGGCCTTACTCCAACACAGCTTGCTTGTGATAAGAATCATGCTTGTGATAAGAATCACACACAAGTTGCCCATTTCCTTGTAGCAAAAAATAAGCCGAAGCCGACAGCTACAGCTAGCTTTCTTGCACGGTCTGGAGTGTTACTTGCAATTGCTGCATCAGTGATGTTTTACCACTGTAGTCGCAAGGACCCAGGTTATATCAGAACGAATGTTCATGACACTCAGAATATGAAAGATGATGGGCCTCTTTCGAAGATTGAGATAGATAATCCTGTTTTGCTAGCTGGAAACTGGTCCCAGCTTTGCCCAACATGCAAGATTGTCAGGCCTGTTCGTGCAAAACATTGTTCTAGCTGTGATCGTTGTGTGGAACAATTTGACCATCATTGTCATTGTTTAAACAATTGCATTGGCAAGAAGAACAAATGGGATTTCTTTCTTTTTCTCGTTCTCGAAGCTTCAGCAATGTTGGTTGCTGGTAGAGTTTGTCTTACAATTGTTCACGTTTGGCTGATATCACACAATCTTACAACAAAGGAATGGCTCAACGACAGTCGGTATAGCTACCTCAGAGGTCCGGATGGTAGATTCAGAAATCCNTATGATCATGGCATCAAGAAGAACTGTTCTGATTTCTGGATCAAAGGATACAATGAAGATGTGGAGTGTGTTGAAGAATTATGTCACTCAGAGGAGGGCAATGGAAATGGCCATGTTGTTAGTAATAATGTGAATTCCTACATTACCATCTCCAAAACACATCATGGTCATATGAATGGCCGTGTTCACGATCACGAGGCAACTACTAAGAATATTTACCGTTACTCAGAGTGGATATACATGGTTGATATTGGGGAAGAAACTGTTTTTCCTAAAGGTGTTGGTAAGCACATTGATGCAAGTAGGTATCTGATTGCAGGAGGAGTAGCAGGTGCAGTGTCACGCACAGCAACTGCACCCCTTGATCGTCTAAAGGTTGTATTGCAAGTGCAAACAACACGAGCTCGTATAATGCCCGCAATAAAAGATATTTGGAGAGAAGGTGGTTTCTTAGGATTTTTTCGAGGCAATGGCTTAAATGTTCTTAAGGTGGCCCCTGAGAGTNNCANTAGATTTNATACCTATGAGATGCTGAAGACCTTCATTGTGAATGGTAAAGGAGAAGGGTCAAAGGCTGATATTGGAGTTGCAGAGTGGCTACTGGCTGGTAGCATAGCTGGTGCTGTAACTCAAACAGCGATATATCCAATGGACCTTGTTAAGACACGGCTTCAGACATANGCTTCTGCAAGTGGAAAAATTCCTAGTCTTAGAACCCTTTCAAAAGATATATGGGTTCAGGAAGGACCNCGAGCTTTTTATAAGGGATTGATACCTTCTCTTCTTGGAATTATCCCCTATGTTGGNATAGATCTTGCTGCATATGAAACCTTGAANGATATGTCCAAAAAGTATATTCTTCATGATAAAGAACCTGGCCCTCTAGTACAATTAGGATGTGGGACGGTATCAGGAGCTCTTGGAGCAGCATGTGTTTACCCATTACAAGTTGTTAGAACAAGAATGCAGGCTCAACGCTCTTATAAAGGAATGACTGATGTGTTCAGGAAAACCTTGGAACNTGAAGGATTTAGGGGATTCTACAAAGGAATGTTTCCTAACTTGCTCAAAGTTGTCCCCTCGGCAAGTATCACTTACATGGTTTATGAGTCTATGAAGAAAGGTTTGGATTTGGAGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01913	33461	42677	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001913s00040942.1	PF00023.25	Ank	12	33	0.0065
Glyur001913s00040942.1	PF01529.15	zf-DHHC	100	198	6.80E-25
Glyur001913s00040942.1	PF00153.22	Mito_carr	345	430	4.20E-22
Glyur001913s00040942.1	PF00153.22	Mito_carr	440	530	4.80E-23
Glyur001913s00040942.1	PF00153.22	Mito_carr	537	622	6.60E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.573
SRR1783600	control	2.522
SRR1783602	moderate drought stress	0.574
SRR1811619	moderate drought stress	0.477

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.131
DRR006520	Root Summer glycyrrhizin high producing strain	1.298
DRR006521	Root Winter glycyrrhizin high producing strain	0.473
DRR006522	Root Winter glycyrrhizin high producing strain	0.559
DRR006523	Root Summer glycyrrhizin low producing strain	0.176
DRR006524	Root Summer glycyrrhizin low producing strain	0.088
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.049
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.049

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.883
SRR2868004	Drought Stress (root)	2.129
SRR2967015	Control (root)	2.398

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.378
SRR9715740	Leaf	0.025
SRR9715741	Leaf	0.047
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.793
SRR8749028	MeJA induced 9h	5.647
SRR8749029	MeJA induced 9h	3.166
SRR8749030	Uninduced	4.599
SRR8749031	Uninduced	4.860
SRR8749032	Uninduced	2.982

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.679
SRR8400027	Control - Root	1.390