Gene detail information of Glyur001911s00038496 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G17680.1 | 9.00E-38 | disease resistance protein (TIR-NBS-LRR class), putative |
| NR | KEH23223.1 | 3.86E-100 | disease resistance protein (TIR-NBS-LRR class), putative [Medicago truncatula] |
| Swissprot | tr|Q40392|TMVRN_NICGU | 6.00E-35 | TMV resistance protein N |
| trEMBL | tr|A0A072U212|A0A072U212_MEDTR | 1.00E-100 | Disease resistance protein (TIR-NBS-LRR class), putative {ECO:0000313|EMBL:KEH23223.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01911 | 12284 | 15400 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001911s00038496.1 | PF00931.17 | NB-ARC | 17 | 129 | 7.70E-11 |
| Glyur001911s00038496.2 | PF00931.17 | NB-ARC | 17 | 129 | 7.70E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.302 |
| SRR1783600 | control | 2.964 |
| SRR1783602 | moderate drought stress | 1.627 |
| SRR1811619 | moderate drought stress | 1.466 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.473 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.278 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.897 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.863 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.174 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.088 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.470 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.588 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.567 |
| SRR2868004 | Drought Stress (root) | 8.557 |
| SRR2967015 | Control (root) | 4.403 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 12.057 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 41.831 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 36.232 |
| SRR9715743 | Root | 29.574 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.790 |
| SRR8749028 | MeJA induced 9h | 3.739 |
| SRR8749029 | MeJA induced 9h | 1.612 |
| SRR8749030 | Uninduced | 2.093 |
| SRR8749031 | Uninduced | 2.659 |
| SRR8749032 | Uninduced | 1.589 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.241 |
| SRR8400027 | Control - Root | 8.851 |