Gene detail

Gene detail information of Glyur001908s00030728

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G28780.1	5.00E-162
NR	XP_003597353.1	0	p-hydroxybenzoic acid efflux pump subunit aaeB [Medicago truncatula]
trEMBL	tr\|G7IHP1\|G7IHP1_MEDTR	0	Fusaric acid resistance-like protein {ECO:0000313\|EMBL:AES67604.1}

Sequence

Transcript Sequence

>Glyur001908s00030728.1
ATGGACAAATTATCATTATTATCACCAATGAAACTGGTGAATATAAAGATGGCACCGTTGTGGAGAGAGTGTTTGAGCTCAGCGTTCAGAACCGCCCTAGCGTGCACCATAGTGGGTGGCGTCACGTTTTACGGCCCACCCTCAATTCGGAGCCTCATATCCTTCCCCGCCTTCTCCTACGTGGCAGCAATCCTCGTCATCATAAACGACGCCACTTTGGGTGACACCATCCGAGGCTGTTGGCTCNCACTCTATGCTACCATCCAGAGCTTAGGACCCGCCATGTTGACCCTCTGGGTTGTTGGACCGAACCGGTTCTCTAAGGGAACCACCTCTTTGGCCGTTGCGCTTGCCGCGTTTGTGGTGGTGCTTCCTTCGGGTCAGTCCACGCATTTGATAGCGAAGAGGATATCGTTGGGTCAGATAGTGCTGGTGTATGTGTTGGCTTATGCNAATGGGGTTCACACGGATCCTCTCATGCACCCTATTCGCTTGGCCGCTAGTACTGCCTTGGGTGTCCTCGCTTGTGTCTTAGCATTGCTCCTTCCCTACCCACGTNTTGCCTCTTACGAGGTAAATAAAAACTACAAGCTATTAACAAATAATATCTTGAAGAGATTGAAGCTTCTAGTAAAGGCAATTAGCGAGGAGGAAAAGACTTGTGCACTCGGATTGATCTCTCGTGCCAAGTCTTTGTCGGAGAGACTTCCAAATAACTTTTTTAGATCACCGCAATGCATGAGCCTGGGAGAGAGACTTGATGAGGTTGATACCAATCTGAAAGGAATGGAATTGGCTTTGAGTTGCACCAATTCATTCCCAGTAGCCCTCGACGAAGACCTTAAACACGGTCTCAACAGGCTCGAGGAACATGTCAGCCTAACCATTAAACACGCCAAACACAGCTTGCTTGGTTGTGGTGGTTCACTCACTGTTCCCGAATCCAGTGCAAAAAACACAACGCATTTTCTCCAATCCCTTCACACCATTCCAACCACTCTCCAAGAGCTACCCACCTTTTTCTTCTTNTTTTGCGCCAAACTCCTTCACAAGAAATCATTGCCCGAGGCCCCAATTGGTGCCCAAGACCACTGGCCCGTTAAGAAAAATGAAGGCAAAGAAAACTGGGCTGATTGGGCCACCACGACTTTAAGAGCCACAAATCTTGTCCCCGCGATTAAGTTCTCTTTCTCCTTGGGCCTTTCAGTTTTCATGGGCCTATTATACAGCAAAGAGAATGGGTTCTGGGCCGGGCTTCCTGTGGCCGTGAGCTATGTTTCGGGGAGGGAAGCCACGTTTAGAGCGGCGAATGTGAAAGCCCAAGGGACAGTGCTAGGAACCGTGTACGGTGTGTTGGGTTGTTTCGTGTTCGAGAGATTNGTGCCGATTAGATTCCTGTCTCTCCTTCCGTGGTTCATCTTCACCAGCTTCCTTCAGCGAAGCCGAATGTATGGGCCANCCGGTGGCATTTCGGCAGTGATTGGAGCCGTCCTGATTCTAGGCCGGAAAAACTTCGGCCCACCAAGCGAGTTCGCAATCGCGAGAATCGTNGAAACCTTTATTGGGCTCTCGTGTTCTATCTTTGTGGATCTTTTAAGGCCCAAGAGGGCTTCTTCGTGCGCCAAAACAGAACTCTCTCAATGCCTGGCCACACTTGGTGAGTCCATTGGGTCGTTGAGCCTACTTTCGGTTGCTGGCAAAACCGATTCTCAATCTCANTTGGAATTGGAAGATCACCAAAGGAGGTTGAAGAAGCAAGTTAATGAGCTCAAGAAATTCANCATAGAAGCAGAAGCAGAGCCCAATTTCTGGTTCTTGCCCTTTCACAGTGCTTGCTATAATAGGCTTTTGGGGTCATTGTCAAGGTTGGTGGATGTGTTGCATTTTGCAGCACGTGCCTTGAAATCCCTTCAACAAGAGTTCCATGGGAAAGAGGAAGTGAATATGCTACAAGTTGAACTTGGACGCATTAAGGAATTGGTTTGTTCTTCGATCAAGATTCTTGAGGAGATTTCTAAGATGAAATCGCTCAAGCTTGTTGAGAAAGAGCTTGAGAAGAAGAAGAAGGGAAATAATGTCTCTTGTGATATCGAATCAGGAAAGTCAACAGAGTGTGGTAATACGTGGATGATTTCGGGATTGGGGGAAGATGGAATAGGAGAAACCATAGGCTCTTTTCTACAGAAGTCAAGAGATGTTGTTGATGACTTATATGGTGGTGAAGGAGAGAAGGAAGTGAAGAGCGAGGTTGTTATGAGTTTGAGTGCCGTGGGGTTCTGCTTGAGTGCATGTATGCAGGGGACAATGGAAATTGAAGAGGCAATCAGGGAACTTGTTCAGTGGGAGAATCCCTCTAGCGAGGTTAATTTGTGTGAGGTATCATGTAAACTACATACTCTCAACAAATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01908	46180	52488	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

cellular_component
GO:0005886 plasma membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001908s00030728.1	PF13515.1	FUSC_2	402	529	1.20E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.167
SRR1783600	control	0.180
SRR1783602	moderate drought stress	0.403
SRR1811619	moderate drought stress	0.393

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.450
DRR006520	Root Summer glycyrrhizin high producing strain	0.439
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	3.721
DRR006524	Root Summer glycyrrhizin low producing strain	3.670
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.038
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.038

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	40.101
SRR2868004	Drought Stress (root)	65.028
SRR2967015	Control (root)	40.241

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.079
SRR9715741	Leaf	0.000
SRR9715739	Root	2.057
SRR9715742	Root	2.277
SRR9715743	Root	2.207

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.145
SRR8749028	MeJA induced 9h	0.056
SRR8749029	MeJA induced 9h	0.104
SRR8749030	Uninduced	0.079
SRR8749031	Uninduced	0.064
SRR8749032	Uninduced	0.024

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.504
SRR8400027	Control - Root	3.808