Gene detail information of Glyur001908s00030720 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G02560.1 | 1.00E-41 | histone H2A 12 |
| NR | NP_001237026.1 | 1.27E-95 | uncharacterized protein LOC100306579 [Glycine max] |
| Swissprot | tr|Q9M531|H2A_EUPES | 2.00E-81 | Histone H2A |
| trEMBL | tr|C6SZZ2|C6SZZ2_SOYBN | 5.00E-96 | Histone H2A {ECO:0000256|RuleBase:RU003556} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01908 | 5675 | 6576 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001908s00030720.1 | PF00125.19 | Histone | 26 | 99 | 5.80E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 50.353 |
| SRR1783600 | control | 49.642 |
| SRR1783602 | moderate drought stress | 35.105 |
| SRR1811619 | moderate drought stress | 34.349 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 65.416 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 64.908 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 35.332 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 34.527 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 54.523 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 54.179 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 43.903 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 44.025 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 349.054 |
| SRR2868004 | Drought Stress (root) | 247.405 |
| SRR2967015 | Control (root) | 226.198 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 152.153 |
| SRR9715740 | Leaf | 69.054 |
| SRR9715741 | Leaf | 80.352 |
| SRR9715739 | Root | 121.038 |
| SRR9715742 | Root | 61.339 |
| SRR9715743 | Root | 67.282 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 176.716 |
| SRR8749028 | MeJA induced 9h | 107.854 |
| SRR8749029 | MeJA induced 9h | 111.680 |
| SRR8749030 | Uninduced | 24.417 |
| SRR8749031 | Uninduced | 9.030 |
| SRR8749032 | Uninduced | 38.752 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 206.831 |
| SRR8400027 | Control - Root | 187.079 |