Gene detail

Gene detail information of Glyur001907s00034850.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G04960.1	2.00E-154	Plant invertase/pectin methylesterase inhibitor superfamily
NR	XP_003526361.1	0	PREDICTED: putative pectinesterase/pectinesterase inhibitor 24-like [Glycine max]
COG	YP_006407803.1	1.00E-51	pectin methylesterase [Belliella baltica DSM 15883]
Swissprot	tr\|Q9FF78\|PME46_ARATH	0	Pectinesterase 46
trEMBL	tr\|I1KFM7\|I1KFM7_SOYBN	0	Pectinesterase {ECO:0000256\|RuleBase:RU000589}

Sequence

Transcript Sequence

>Glyur001907s00034850.1
ATGTCTTCCTTCAAATCCTATGGGAAAGTNGATGAACACGATCAAATGGTGTTGGAAGCCAAGAGGAAAACCCGAAAGAGAATCGCAATCATAGGCTTATCCTCAATAGTCCTTGTTGGTGTTGTGATTGCTGCTGTGTTTGGAGTTGTTAGCAATAATAACTCACAAAGTGCTGCTACTCCTCATTCTCAATCTGTGACCAATTCTGTTGTGAAGGNTGTTTGTGATGTGACATTGTACAAGGACTCATGTTACAACAGCCTTGGCTCTGTTGTTGTGAACCATGACTCAGATTATGGGCCTGAGGAGCTGTTCAAGTTGTCCATCAAAGTGGCCTTAACTCAAGTTTCTAAAGTTGTTGAGTATTTCAAGAATGAGCATAATGGAGTTTTCAAAGGCTTGGTGAGTGATGGAAGAAGGACTAAGGAAGCCTTGNGAAATTGTAGGGAACTTTTGGGTCTTGCTGTTGATCATCTCAATATTTCCTTGACTTCAGGGGAAAATTCTTCACTTCTTGAGGTTTTTGAGGATCTCCAAACATGGTTAAGTGCTGCAGGTACGTACCAGCAGACTTGCATTGAAGGCTTTGAGGATGCAAAAGAAGCACTTAAGGCAAGTGTAGTAAGCCACCTTAAAAATTCTACAGAGNTCACAAGCAACAGTCTTGCCATCATCACCTGGATTAACAAGGCCGCAAGCACGCTGAACTTGCGGCGATTACTGAGTTTACCTTATCAGAAGAACGAAGCACCGGAATGGCTTCATTCAAGTGACAGGAGGCTTCTTAGGACACAGGATTTGAAATCAAAAGCTGACATTGTTGTGGCCAAAGATGGCAGTGGGAAATATAGAACCATATCTGATGCACTTAAACATGTCCCTAATAAGAGTAACAAGAGAACTGTGATCTATGTGAAGAGAGGGGTTTACTATGAAAATGTGAGGGTTGAGAAGACTAAATGGAATGTGGTNATGATTGGCGATGGTATGACTGCTACAATTGTATCTGCCAGCCCTGTGTTTGGAAGGAATTTCATAGCTAGAGACATGGGTTTTCGCAATACGGCTGGTCCTCATAAGCACCAAGCAGTGGCACTAATGACAAGTGCTGATCAAGCAGTTTACTATAGGTGTCACATTGATGCATATCAGGACACTCTCTATGCTCATTCCAACCGCCAGTTTTACAGAGAATGCAACATCTATGGGACAGTTGATTTCATCTTTGGCAATTCTGCAGTTGTGATCCAAAACTGCAACATTATGCCAAATACTGTCCAAACATACCTTGGAAGACCCTGGAAGAATTACTCAACCACAGTATACATGAGATCCAGAATGGAAAGCTTTGTTAACCCAAAGGGTTGGTTACCATGGGTAGGGAACTCAGCACCTGACACCATTTTCTATGCAGAGTTTCAGAATGTTGGACCTGGTGCTTCAACAAAGAATAGAGTGAAGTGGAAGGGTTTGAGAACCATCACTAGTAAACAAGCCAGCAAGTTTACAGTAAAGTCTTTNCTTCAAGGAGATAGATGGATTCCTGCATCAAGTGCACCCTTTAAGTCTGATTTGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01907	25993	29913	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	CE8

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0042545 cell wall modification

cellular_component
GO:0005618 cell wall

molecular_function

GO:0004857 enzyme inhibitor activity

GO:0030599 pectinesterase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001907s00034850.1	PF04043.10	PMEI	66	224	1.40E-30
Glyur001907s00034850.1	PF01095.14	Pectinesterase	272	423	6.60E-68
Glyur001907s00034850.1	PF01095.14	Pectinesterase	424	510	4.30E-34

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.161
SRR1783600	control	0.163
SRR1783602	moderate drought stress	0.089
SRR1811619	moderate drought stress	0.032

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.562
DRR006520	Root Summer glycyrrhizin high producing strain	0.493
DRR006521	Root Winter glycyrrhizin high producing strain	0.243
DRR006522	Root Winter glycyrrhizin high producing strain	0.309
DRR006523	Root Summer glycyrrhizin low producing strain	0.835
DRR006524	Root Summer glycyrrhizin low producing strain	0.817
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.153
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.221

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.135
SRR2868004	Drought Stress (root)	4.615
SRR2967015	Control (root)	4.026

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.026
SRR9715740	Leaf	0.041
SRR9715741	Leaf	0.000
SRR9715739	Root	0.000
SRR9715742	Root	0.294
SRR9715743	Root	0.114

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.161
SRR8749028	MeJA induced 9h	0.141
SRR8749029	MeJA induced 9h	0.313
SRR8749030	Uninduced	0.054
SRR8749031	Uninduced	0.290
SRR8749032	Uninduced	0.266

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.317
SRR8400027	Control - Root	0.398