Gene detail information of Glyur001905s00036194 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G60790.1 | 2.00E-165 | Plant protein of unknown function (DUF828) |
| NR | XP_004489803.1 | 0 | PREDICTED: uncharacterized protein LOC101513224 [Cicer arietinum] |
| Swissprot | tr|Q8VYR3|TBL2_ARATH | 0 | Protein trichome birefringence-like 2 |
| trEMBL | tr|K7K1G2|K7K1G2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G03480.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01905 | 34823 | 39057 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001905s00036194.1 | PF14416.1 | PMR5N | 191 | 243 | 3.20E-22 |
| Glyur001905s00036194.1 | PF13839.1 | PC-Esterase | 245 | 525 | 7.30E-68 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.635 |
| SRR1783600 | control | 9.329 |
| SRR1783602 | moderate drought stress | 5.249 |
| SRR1811619 | moderate drought stress | 5.139 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.339 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.585 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.943 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.932 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.658 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.734 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.284 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.283 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.251 |
| SRR2868004 | Drought Stress (root) | 5.564 |
| SRR2967015 | Control (root) | 5.510 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.920 |
| SRR9715740 | Leaf | 4.028 |
| SRR9715741 | Leaf | 1.907 |
| SRR9715739 | Root | 0.889 |
| SRR9715742 | Root | 4.024 |
| SRR9715743 | Root | 4.003 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.615 |
| SRR8749028 | MeJA induced 9h | 4.533 |
| SRR8749029 | MeJA induced 9h | 3.192 |
| SRR8749030 | Uninduced | 0.128 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.200 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.583 |
| SRR8400027 | Control - Root | 14.817 |