Gene detail

Gene detail information of Glyur001905s00036191

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G23390.1	1.00E-57	Kelch repeat-containing F-box family protein
NR	XP_004489820.1	0	PREDICTED: F-box/kelch-repeat protein At1g23390-like [Cicer arietinum]
Swissprot	tr\|Q9LDE3\|FBK9_ARATH	3.00E-83	F-box/kelch-repeat protein At1g23390
trEMBL	tr\|V7CGW0\|V7CGW0_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW29364.1}

Sequence

Transcript Sequence

>Glyur001905s00036191.1
ATGGCAACACAAAGGGAAGCCGAAGAAGCACCCATCCATGGCGATATCTTAGAAGCCATATTCTCGCACGTGCCACTCGTCCAACTGGTTCCCGCCTGTCACGTGTCAAGGGCCTGGAAGCGTGCGGTGTCTTCTTCCCTTACCCACGTCAGACCCACAAAACCATGGCTCATAATCCTCTCCCAGAGCACACGCGCTTCTCACGTGACAACCGCGCACGCCTACGACCCCCGCTCGCACCTGTGGCTGGAGATTAAACACCACCCGTCGATCTGCGGCGGCGCCGTACGAGCAACCCACTCCACGCTGCTCTACACTCTNTCCCCGGCAGAATTCGCCTTCTCCCTCGACGCGCTCCACCTCGCGTGGCACCGCGCGCCATCCCCGCGCGTGTGGCGCACGGACCCAATCGTGGCGCGCGTGGGAAAGCGCGTGGTTGTAGCCGGAGGCGCGTGCGAGTTCGAGGACGACCCGCTGGCGGTGGAGATGTACGACACGGAGAGCCGCGTTTGGGAGGAGTGCCTTCCGATGCCGGCGATGCTGAAGGGCTCGTCGGCGTCCACGTGGCTGTCGGTCGCCGTCGCCGGAGACTCGATGCACGTGACGGAGAAGAACTCCGGCTTGACGTACTCGTTCGACACCGAGACGATGAAGTGGGAGGGGCCGTACGATCTGCGTCCCGATCATAGCGTGTGCTACTGTGTCACCGGAACCGTAAGGGGAGAGCGTTTGATGGTGGCGGGGCTGGTGGGTAATCACGCGGTGAAGCTGTGGGCGGTGAAGGGGGGATTATGTTCGGGAATGATGGAGTTAGTGGGTGAGATGCCGAAGGAGTTGGTGGGGAAGCTGAAGGGTGGTTCGGAGTTTGGTTCGGTGGAGGTGACTTGGGTTGGGGATTTTGTTTACTTGCGGAATACGTTGGTTCCGGAGGAGGTGGTTGCGTGCGAGGTTGTGGAAGGGTGTGTGTGCGAGTGGAGGAGTGTGCACAACGTGGCTGTCAACGGCGGTGGGAGGGTGGTGGTTTGCGGCGGCGACGTGGGCATGGAGGATCTGCAGAGAGCGGTGCTGTCGGGGAAGCGCACATTTTGCATGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01905	7596	8690	+

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001905s00036191.1	PF00646.28	F-box	15	46	0.00045

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.622
SRR1783600	control	10.520
SRR1783602	moderate drought stress	11.783
SRR1811619	moderate drought stress	11.767

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.422
DRR006520	Root Summer glycyrrhizin high producing strain	12.804
DRR006521	Root Winter glycyrrhizin high producing strain	0.767
DRR006522	Root Winter glycyrrhizin high producing strain	0.506
DRR006523	Root Summer glycyrrhizin low producing strain	15.485
DRR006524	Root Summer glycyrrhizin low producing strain	14.267
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.923
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.223

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	20.146
SRR2868004	Drought Stress (root)	19.762
SRR2967015	Control (root)	28.967

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.582
SRR9715740	Leaf	10.404
SRR9715741	Leaf	9.307
SRR9715739	Root	31.440
SRR9715742	Root	15.962
SRR9715743	Root	19.168

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	45.741
SRR8749028	MeJA induced 9h	20.880
SRR8749029	MeJA induced 9h	28.551
SRR8749030	Uninduced	3.223
SRR8749031	Uninduced	1.125
SRR8749032	Uninduced	5.501

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	29.012
SRR8400027	Control - Root	21.131