Gene detail information of Glyur001904s00040206 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G56090.1 | 5.00E-63 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | XP_004488801.1 | 2.01E-135 | PREDICTED: protein unc-45 homolog A-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q9MUK5|TOC64_PEA | 2.00E-06 | Translocon at the outer membrane of chloroplasts 64 |
| trEMBL | tr|I1KU07|I1KU07_SOYBN | 8.00E-130 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G17950.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01904 | 20105 | 23428 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001904s00040206.1 | PF13414.1 | TPR_11 | 6 | 57 | 2.20E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.912 |
| SRR1783600 | control | 8.064 |
| SRR1783602 | moderate drought stress | 8.930 |
| SRR1811619 | moderate drought stress | 8.959 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 29.270 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 29.065 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 16.422 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 15.854 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 39.336 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 40.620 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.787 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.527 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 14.413 |
| SRR2868004 | Drought Stress (root) | 17.938 |
| SRR2967015 | Control (root) | 22.116 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 16.513 |
| SRR9715740 | Leaf | 21.614 |
| SRR9715741 | Leaf | 23.196 |
| SRR9715739 | Root | 7.271 |
| SRR9715742 | Root | 18.649 |
| SRR9715743 | Root | 16.471 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 24.803 |
| SRR8749028 | MeJA induced 9h | 39.935 |
| SRR8749029 | MeJA induced 9h | 34.548 |
| SRR8749030 | Uninduced | 46.447 |
| SRR8749031 | Uninduced | 36.517 |
| SRR8749032 | Uninduced | 32.925 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.934 |
| SRR8400027 | Control - Root | 21.730 |