Gene detail

Gene detail information of Glyur001902s00038014

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G51570.1	2.00E-92	SPFH/Band 7/PHB domain-containing membrane-associated protein family
NR	XP_002322417.1	2.30E-151	band 7 family protein [Populus trichocarpa]
COG	YP_007201322.1	3.00E-74	membrane protease subunit, stomatin/prohibitin [Singulisphaera acidiphila DSM 18658]
Swissprot	tr\|Q9FHM7\|HIR4_ARATH	1.00E-113	Hypersensitive-induced response protein 4
trEMBL	tr\|B9ICW0\|B9ICW0_POPTR	9.00E-152	Band 7 family protein {ECO:0000313\|EMBL:EEF06544.1}

Sequence

Transcript Sequence

>Glyur001902s00038014.1
ATGGGGAACACGTTCTGCTTGTTTTGTGGGTGCGTTGAACAATCGAGCGTCGCGGTGGTGGAACAGTGGGGTCGCTTCCACAGGCTCGCCCCACCCGGCTTCCATTTCTTCAACCCCTTCGCCGGCGAATGCCTCGCCGGCATCCTCTCCACCCGGATCTCCTCCCTCGACGACAACGTGTTTGTGCAGTTGCTGTGCTCGATTCAATACAGGGTGGTTAAGGAGAACGCTGATGATGCTTTCTACGAGTTGCAGAACCCGCAAGAACAGATCCAGGCTTATGTTTTTGATGTGACCCGTGCTATTGTTCCGAGGATGAGTTTGGATGAGCTGTTTGAGCAAAAAGGTGAGGTTGCCAAAGCTGTTTTGGAGGAACTTGAAAAGGACAACGTGTTTGTGCAGTTGCTGTGCTCGATTCAATACAGGGTGGTTAAGGAGAACGCTGATGATGCTTTCTACGAGTTGCAGAACCCGCAAGAACAGATCCAGGCTTATGTTTTTGATGGTTGTGTTGTGTTCTTTCTTCGAGTTCCCCTTTTTAGAAACGTGGTGATGGGAGAATATGGATACAGCATAGANCACATACTGATGGTTGATATTATACCTGATCCTTCTGTGCGGAAGGCAATGAATGAGATCAATGCAGCTCAAAGGATGCTAATTGCTAGTGAATACAAAGGAGATGCAGAAAAGGTGCTTCTGGTTAAAAAGGCAGAAGCAGAAGCNGAATCGAAGTATTTGGGCGGGGTTGGTGTGGCCAGGCAGCGGCAAGCCATCACGGATGGCCTGAGGGAGAACATCTTGGAATTCTCTAACAAGGTAGGAGGAACTTCCGCGAAGGAAGTGATGGATCTTATCATGATTACTCAGTACTTTGACACAATCAGAGACCTTGGGAACACATCAAACAANACCACAATTTTCATACCCCATGGACCTGGCCATGTTAGGGATATTGGTGAGCAAATTCGCAATGGAATGATGGAAGCAGCCAGTGCTCAAGTAAATAATATCGAATGATATTTGTAACATTCCCTTTATCAAATTTTACCCCTTCCCCTTCCCTATCACACACACAGATTACAGTATTATATGGATATGTAATATGTTTCTGTTGGATTTTATAGAAGAAAAGTTTTGAACAGTTAGAAGTTGTAAATAAAGATGGTTTTGAGTTGTACTATACAATCTCTGCAGCCATGCTATAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01902	8720	12807	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016020 membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001902s00038014.1	PF01145.20	Band_7	12	127	3.10E-14
Glyur001902s00038014.2	PF01145.20	Band_7	12	212	2.20E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	46.282
SRR1783600	control	46.459
SRR1783602	moderate drought stress	44.641
SRR1811619	moderate drought stress	44.256

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	80.462
DRR006520	Root Summer glycyrrhizin high producing strain	79.424
DRR006521	Root Winter glycyrrhizin high producing strain	255.083
DRR006522	Root Winter glycyrrhizin high producing strain	247.786
DRR006523	Root Summer glycyrrhizin low producing strain	80.459
DRR006524	Root Summer glycyrrhizin low producing strain	78.410
DRR006525	Leaf Summer glycyrrhizin high producing strain	57.971
DRR006526	Leaf Summer glycyrrhizin high producing strain	57.914

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	56.767
SRR2868004	Drought Stress (root)	59.101
SRR2967015	Control (root)	66.531

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	36.158
SRR9715740	Leaf	48.727
SRR9715741	Leaf	31.763
SRR9715739	Root	10.864
SRR9715742	Root	21.738
SRR9715743	Root	21.883

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	42.327
SRR8749028	MeJA induced 9h	41.515
SRR8749029	MeJA induced 9h	60.796
SRR8749030	Uninduced	52.093
SRR8749031	Uninduced	64.288
SRR8749032	Uninduced	67.800

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	43.587
SRR8400027	Control - Root	39.666