Gene detail

Gene detail information of Glyur001901s00042932.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G21750.1	0	PDI-like 1-1
NR	KHN35506.1	0	Protein disulfide-isomerase [Glycine soja]
COG	YP_865769.1	5.00E-14	thioredoxin [Magnetococcus marinus MC-1]
Swissprot	tr\|P29828\|PDI_MEDSA	0	Protein disulfide-isomerase (Precursor)
trEMBL	tr\|I7FST9\|I7FST9_SOYBN	0	Protein disulfide-isomerase {ECO:0000256\|RuleBase:RU361130}

Sequence

Transcript Sequence

>Glyur001901s00042932.1
GCTCACGTGTCTTCAGCAGTGTTCTCCGTGTGCTCGTTCTGCTCACACACACACTTTGCCCTACAAAAACCCCCTTCTCAGCATCTCCGAAATCCTAAATTTTTTTTTCAAACCTTTCTTTTGGTTGTTAAATTGAATCGAACGATGATGGCGGAAAGAGTTTCGATTTGGTTTCTCTTCGTGTTCGCGCTCTCTCTAATTGTGTCGCTGCCATCTCAGATCTCCGCTGATGAATCGGAGTCCAAGGAATTCGTGCTCACATTGGATCACTCCAACTTCTCCGACACTGTCAGCAAGCACAATTTCATCGTCGTCGAGTTCTACGCACCCTGGTGTGGCCACTGTAAGAAGCTTGCTCCGGAGTATGAGAAAGCTGCATCTATCTTGAGNAGTCACGATCCTCCTGTTGTTTTGGCTAAAGTTGATGCCAATGAGGAGAAGAACAGAGACCTTGCTTCGGAATTTGAGNTTAGGGGATTCCCCACAATTAAGATTTTGAGAAATGGTGGAAAGAACGTTCAAGAATACAAGGGTCCCCGTGAAGCAGATGGTATTGTGGACTACTTGAAGAAACAAAGTGGTCCTGCTTCAACTGAAATTAAATCTGCTGATGATGCTAGTGCTTTTATTGGTGAAAATAAAGTTGCTATTGTTGGAGTTTTTCCAAAATTTTCTGGGGAGGAGTTTGATAACTTTACTGCATTAGCTGAGAAGTTGCGTTCTGACTATGACTTTGGTCACACTTTGAATGCCAAGCACCTTCCACGGGGAGAATCATCAGTGAATGGTCCCATAGTTAGGCTATTCAAGCCTTTTGATGAGCTCTTTGTGGACTTCCAGGATTTCCATCCGGAAGCTCTAGAGAANTTTGTTGAAGAATCTAGTACCCCTGTCGTGACTGTCTTTAACAATGACCCAAGCAATCACCCTTTTGTTGTCAAATTCTTTAACAGTCCCCATGCAAAGGCAATGATGTTCATCAACTTCTCTGCCGAAGGTGCTGAATCTTTAAAATCAAAATATCGTGAAACTGCTGAGCAATACAGACAACAGGGAATAAGCTTTCTGGTAGGAGATGTCGAGGCTAGTCAAGGTGCCTTCCAGTACTTTGGACTAAAGGAAGACGAAGTACCTCTAATTATTATACAACATAATGATGGGAAGAAGTTTTTCAAACCCAATTTGGAGCCTGATCACATTTCAACTTGGTTGAAGGCATACAAGGATGGAAATGTTGCACCATATCTTAAGTCTGAACCTATTCCTGAATCTAACAANGAACCTGTTAAAGTGGTAGTTGGAAACAGTATTCAGGACATAGTTTTCAACTCAGGGAAGAATGTTTTGCTTGAGTTTTATGCACCCTGGTGTGGTCATTGCAAACAGTTGGCTCCAATATTGGATGANGTTGCTGTCTCATATCAAAGTGATGCTGATGTTGTTATTGCAAAACTGGATGCAACTGCCAACGATATCCCAAGTGAAACCTTTGAAGTCCAAGGTTATCCAACTCTATACTTCAGGTCAGNAAGTGGGAAACTATCGCAATACGATGGCAATAGGACCAAGGAAGACATCATAGAATTCATCGAAAAGAACAGGGATAAGCCTGCTGCTCAGCCACAAGAACAAGGAAAAGATGAGCTTTGAAAGGAAGAAAAGAGCTTGTTCCTCTCGGAGGATATAGACACAGTTACATGTGGGGGGTCGTCTACATCTCTTTTGTATCTTAGAATCAGAAGTTAGAAAATCTTAGTGCCAATCTATCTTCCTTTTGCTTGACCTTTTATCTTTTCGGTTTCTCTTATGTATTAGTATTACTGAATAAAATGCTGAGTTTTTGCGGAGTTTTTTGCTGGAAACTTGTGGCTGTAGAAAACCAGTAGTTAAATTAGTAGAGATGCTTTTAGATAACCATCAAGTTTGCAGTATCTTATCTATAAATATTTCATACTATAAAAGAAGCAAATTAACAGAGTTTCAGTTGGTAGTTAGATAAATCGATAAACGATGCATGGACATGGTTCACGAATCACAAATCCTGCTTGCTCCCTGTTGCTCAAAACCAAGTGATGTAATGTAACTGGACCCTACGCTCCCTGTACTTAAATTTAATCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01901	1064	5738	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K09580	PDIA1, P4HB	EC:5.3.4.1	Protein processing in endoplasmic reticulum	map04141

Gene Ontology

biological_process
GO:0045454 cell redox homeostasis

cellular_component
GO:0005783 endoplasmic reticulum

molecular_function
GO:0016853 isomerase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001901s00042932.1	PF00085.15	Thioredoxin	37	144	2.20E-30
Glyur001901s00042932.1	PF13848.1	Thioredoxin_6	173	357	2.10E-22
Glyur001901s00042932.1	PF00085.15	Thioredoxin	381	485	7.20E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	151.005
SRR1783600	control	151.448
SRR1783602	moderate drought stress	121.121
SRR1811619	moderate drought stress	120.217

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	282.091
DRR006520	Root Summer glycyrrhizin high producing strain	278.819
DRR006521	Root Winter glycyrrhizin high producing strain	181.653
DRR006522	Root Winter glycyrrhizin high producing strain	176.756
DRR006523	Root Summer glycyrrhizin low producing strain	202.386
DRR006524	Root Summer glycyrrhizin low producing strain	202.429
DRR006525	Leaf Summer glycyrrhizin high producing strain	125.764
DRR006526	Leaf Summer glycyrrhizin high producing strain	125.200

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	273.005
SRR2868004	Drought Stress (root)	155.902
SRR2967015	Control (root)	199.036

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	84.639
SRR9715740	Leaf	112.347
SRR9715741	Leaf	88.096
SRR9715739	Root	72.785
SRR9715742	Root	101.611
SRR9715743	Root	98.642

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	359.889
SRR8749028	MeJA induced 9h	283.031
SRR8749029	MeJA induced 9h	252.157
SRR8749030	Uninduced	247.233
SRR8749031	Uninduced	180.978
SRR8749032	Uninduced	131.484

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	190.877
SRR8400027	Control - Root	180.954