Gene detail information of Glyur001900s00037696 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G27550.1 | 3.00E-45 | centroradialis |
| NR | NP_001236597.1 | 4.11E-67 | brother of FT and TFL1 protein [Glycine max] |
| Swissprot | tr|Q9XH44|CET1_TOBAC | 4.00E-60 | CEN-like protein 1 |
| trEMBL | tr|B3SN57|B3SN57_SOYBN | 2.00E-67 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA16G32080.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01900 | 21542 | 22610 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001900s00037696.1 | PF01161.15 | PBP | 1 | 96 | 3.20E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.000 |
| SRR1783600 | control | 10.419 |
| SRR1783602 | moderate drought stress | 7.509 |
| SRR1811619 | moderate drought stress | 6.910 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 16.392 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 16.473 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.878 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.511 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.978 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.506 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.056 |
| SRR2868004 | Drought Stress (root) | 3.696 |
| SRR2967015 | Control (root) | 4.243 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.548 |
| SRR9715740 | Leaf | 0.362 |
| SRR9715741 | Leaf | 0.754 |
| SRR9715739 | Root | 3.421 |
| SRR9715742 | Root | 7.011 |
| SRR9715743 | Root | 6.955 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.705 |
| SRR8400027 | Control - Root | 8.707 |