Gene detail information of Glyur001899s00032510 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G52230.1 | 4.00E-51 | photosystem I subunit H2 |
| NR | ABI84258.1 | 6.68E-89 | photosystem I psaH protein [Arachis hypogaea] |
| Swissprot | tr|P22179|PSAH_SPIOL | 1.00E-75 | Photosystem I reaction center subunit VI, chloroplastic (Precursor) |
| trEMBL | tr|Q06H28|Q06H28_ARAHY | 2.00E-89 | Photosystem I psaH protein {ECO:0000313|EMBL:ABI84258.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01899 | 39812 | 42406 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001899s00032510.1 | PF03244.9 | PSI_PsaH | 6 | 145 | 3.10E-67 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.436 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.440 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.457 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.595 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.293 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.301 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1168.293 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1161.603 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 23.184 |
| SRR2868004 | Drought Stress (root) | 25.228 |
| SRR2967015 | Control (root) | 4.647 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 888.228 |
| SRR9715740 | Leaf | 774.929 |
| SRR9715741 | Leaf | 662.266 |
| SRR9715739 | Root | 0.203 |
| SRR9715742 | Root | 2.183 |
| SRR9715743 | Root | 1.333 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.673 |
| SRR8749028 | MeJA induced 9h | 5.520 |
| SRR8749029 | MeJA induced 9h | 2.870 |
| SRR8749030 | Uninduced | 12.762 |
| SRR8749031 | Uninduced | 0.413 |
| SRR8749032 | Uninduced | 11.506 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.720 |
| SRR8400027 | Control - Root | 10.059 |