Gene detail information of Glyur001899s00032507 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G79870.2 | 3.00E-95 | D-isomer specific 2-hydroxyacid dehydrogenase family protein |
| NR | XP_004506841.1 | 2.14E-171 | PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2-like [Cicer arietinum] |
| COG | NP_355974.1 | 8.00E-82 | 2-hydroxyacid dehydrogenase [Agrobacterium fabrum str. C58] |
| Swissprot | tr|Q65CJ7|HPPR_PLESU | 9.00E-146 | Hydroxyphenylpyruvate reductase |
| trEMBL | tr|I1KGN9|I1KGN9_SOYBN | 2.00E-168 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G02260.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01899 | 29309 | 32196 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001899s00032507.1 | PF00389.25 | 2-Hacid_dh | 7 | 277 | 2.10E-25 |
| Glyur001899s00032507.1 | PF02826.14 | 2-Hacid_dh_C | 122 | 249 | 2.80E-39 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 33.928 |
| SRR1783600 | control | 33.948 |
| SRR1783602 | moderate drought stress | 20.400 |
| SRR1811619 | moderate drought stress | 20.119 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 29.795 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 31.392 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 16.339 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 17.835 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 29.906 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 29.365 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 84.049 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 81.696 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 92.631 |
| SRR2868004 | Drought Stress (root) | 70.260 |
| SRR2967015 | Control (root) | 69.520 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 129.568 |
| SRR9715740 | Leaf | 154.699 |
| SRR9715741 | Leaf | 144.562 |
| SRR9715739 | Root | 45.241 |
| SRR9715742 | Root | 45.180 |
| SRR9715743 | Root | 49.915 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 50.941 |
| SRR8749028 | MeJA induced 9h | 52.373 |
| SRR8749029 | MeJA induced 9h | 42.246 |
| SRR8749030 | Uninduced | 37.396 |
| SRR8749031 | Uninduced | 19.220 |
| SRR8749032 | Uninduced | 31.117 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 65.190 |
| SRR8400027 | Control - Root | 64.124 |