Gene detail information of Glyur001895s00033540 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G38610.2 | 5.00E-105 | RNA-binding KH domain-containing protein |
| NR | AFK47467.1 | 0 | unknown [Lotus japonicus] |
| Swissprot | tr|Q9ZVI3|QKIL3_ARATH | 7.00E-131 | KH domain-containing protein At2g38610 |
| trEMBL | tr|I3T4M5|I3T4M5_LOTJA | 0 | Uncharacterized protein {ECO:0000313|EMBL:AFK47467.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01895 | 25283 | 29396 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 19.563 |
| SRR1783600 | control | 19.831 |
| SRR1783602 | moderate drought stress | 28.358 |
| SRR1811619 | moderate drought stress | 27.937 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 48.511 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 48.115 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 61.077 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 60.092 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 75.763 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 76.030 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 38.237 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 38.207 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 12.524 |
| SRR2868004 | Drought Stress (root) | 8.952 |
| SRR2967015 | Control (root) | 16.999 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 10.547 |
| SRR9715740 | Leaf | 15.434 |
| SRR9715741 | Leaf | 11.584 |
| SRR9715739 | Root | 2.993 |
| SRR9715742 | Root | 5.801 |
| SRR9715743 | Root | 5.550 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.099 |
| SRR8749028 | MeJA induced 9h | 0.284 |
| SRR8749029 | MeJA induced 9h | 0.100 |
| SRR8749030 | Uninduced | 0.240 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.072 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.501 |
| SRR8400027 | Control - Root | 12.023 |