Gene detail

Gene detail information of Glyur001895s00033539

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G58060.1	1.00E-145	Cation efflux family protein
NR	XP_004500396.1	0	PREDICTED: metal tolerance protein 4-like [Cicer arietinum]
COG	YP_004167474.1	9.00E-24	cation diffusion facilitator family transporter [Nitratifractor salsuginis DSM 16511]
Swissprot	tr\|Q10PP8\|MTP4_ORYSJ	0	Metal tolerance protein 4
trEMBL	tr\|G7IV59\|G7IV59_MEDTR	0	Mn-specific cation diffusion facilitator transporter MTP8.1 {ECO:0000313\|EMBL:AES70810.1}

Sequence

Transcript Sequence

>Glyur001895s00033539.1
ATGAATCTCTGAGTGTTCCTTTTCATTCATTGTTTTTCTGGTGATGATATAGTGTTGCATGGGTCATTCATGACTTTTTGTTGTTGATGATAGTAAGTGATAACATAACATGGACGGGAATTCGGGTTCGGATCCGACGAGGCCGCTGCTGGAGAAGAATGACCGGAGCTCCGCCGAACACGACGGTCGGAGAGGCCGAGTCAATCGCGGGAACTCGGTTAACTCGCTCAGATCCGCCTTTCTGTCCATGCTTCCCGATAAGGTCCGTTCTGGCCTTGATTCTGAGTCTCCCTTNGACGACCCTGATCTCTCCACCGCCACCGCCTTAAGCCAAGGAGAGAAAGAGTACTATGAAAGACAATTTGCTACACTGAAATCATTTGAGGAAGTAGACACCGTGGTGGAATCTGATGAGTGCATTGATGATGAGGAAGACAAAGAGCAACAGGCTCAACAAGAAAGAGCCATGAAGATCTCAAATTACGCAAATATAGCTTTGTTGATATTGAAGGTTTATGCCACGGTAAGGAGTGGGTCAATAGCTATTGCAGCGTCAACTTTGGATTCTCTGCTTGATCTCATGGCGGGTGGCATACTCTGGTTCACTCACATCTCAATGAAGAACATAAATATCTACCAGTATCCCATTGGAAAACTGAGGATGCAGCCAGTAGGCATAATTGTCTTTGCTGCTGTCATGGCAACACTTGGCTTTCAGGTGCTAATCACAGCCGTTAATCAACTGATAGCAAACAGTCCCAGTGAAAAGATGTCAGCTGAACAGCTAATATGGTTGTACTCAATTATGATATTTGCAACGGTGGTGAAGCTTATGCTTTGGCTTTACTGTAGAACCTCAGGAAACAAGATTGTTCGTGCCTATGCAGATGATCACCACTTTGATGTTGTAACAAATGTAGTTGGATTAGTTGCGGCTGTTCTTGGTGATAAGTATTACTGGTGGATTGACCCCATAGGAGCTATTTTGCTTGCAATTTACACTATCTCAAATTGGTCTCGCACTGTCATGGAAAATGCAGTATCACTGGTGGGACAATCAGCACCTCCTGAAGTTTTGCAGAAGCTGACATATCTCGTTATAAGGCACCCTCGGATTAATCGTGTTGACACTGTCCGCGCATACACATTTGGCGTTCTATATTTTGTGGAGGTGGACATTGAACTGCCAGAAGATTTACCCTTAAAAGAAGCNCATGCCATCGGAGAGACCCTCCAGATAAAGCTTGAGAAACTTCCAGAAGTTGAGAGGGCATTTGTTCATCTAGACTTTGAGTGTGATCACAAACCAGAGCACTCAGTTCTCAGCAAACTACCCAACAATCAGCCTTAAGCACANTTTACAGCTCCGTGAATAAGAAATGCAAACTTTGTCATTGAGCCTTTACGAATGATTTCTTCATGAAGAGTGAAAAGTGTAAAAGAGCAGGATCCAGCTGTTTGCTTATATGAAAGCTGATAAGGCAACCGGGCTGTTGCCAAACTTCTAATAACTTTCAAACCAAACACATTCTCTAGGTAGTTCTATCGGCTGATTAGAAGCTTTTTCAAAGTTCATTAGTTCTTTCTGTAGTTCATTTTGAATCACACAGAGCCTTGATGAATAACTTGTCATATTATGAACATGGTGTATTGAAGGTTANCTTGGCCTGTTGTATCCTTAATATATAAATACCTCAGTTTCTNTGAGACAATATATCCGTATGAGCAAAAACAGACATGTTCGATTTAAAATTCGATTCACATAAAGCATAGAAGGCTAATCAATGGGTATGGTTACTAAGTTGNTAGCAGACGAGGTCAATACGAACAAGAAATTTCGTGAACAATTGGTGTGGNTTGTTAAGAAAAACATGAAAAACGGGGAATATAAAGAATAGGAAACGAGCGCTCCAGAGATGAACTTCAAAATATCTGAACTATATGAAATAACCCTTCAAAATATCCGTATTCCGTTCCCTTTTTTTCGTAATTCACTGATTTTTGTTGCTGTACGCCTGTACGTAAAACCATATACGAACTTTGTATATATGTACATTCCACAAGCTTACACAAATGGAGATCCATCTATCGGCAAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01895	18439	22446	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006812 cation transport

GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0008324 cation transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001895s00033539.1	PF01545.16	Cation_efflux	122	397	3.00E-39

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.099
SRR1783600	control	3.126
SRR1783602	moderate drought stress	2.822
SRR1811619	moderate drought stress	2.883

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.066
DRR006520	Root Summer glycyrrhizin high producing strain	7.130
DRR006521	Root Winter glycyrrhizin high producing strain	180.553
DRR006522	Root Winter glycyrrhizin high producing strain	175.923
DRR006523	Root Summer glycyrrhizin low producing strain	18.364
DRR006524	Root Summer glycyrrhizin low producing strain	18.039
DRR006525	Leaf Summer glycyrrhizin high producing strain	19.378
DRR006526	Leaf Summer glycyrrhizin high producing strain	19.234

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	58.783
SRR2868004	Drought Stress (root)	51.818
SRR2967015	Control (root)	76.112

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.179
SRR9715740	Leaf	9.657
SRR9715741	Leaf	8.281
SRR9715739	Root	0.935
SRR9715742	Root	0.409
SRR9715743	Root	0.782

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.713
SRR8749028	MeJA induced 9h	30.593
SRR8749029	MeJA induced 9h	33.383
SRR8749030	Uninduced	14.206
SRR8749031	Uninduced	32.345
SRR8749032	Uninduced	38.572

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.739
SRR8400027	Control - Root	9.600