Gene detail

Gene detail information of Glyur001894s00031739

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G40030.2	2.00E-75	Histone superfamily protein
NR	XP_007163668.1	3.32E-92	hypothetical protein PHAVU_001G253800g [Phaseolus vulgaris]
Swissprot	tr\|Q71H73\|H33_VITVI	7.00E-94	Histone H3.3
trEMBL	tr\|F6HRP4\|F6HRP4_VITVI	5.00E-93	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB57352.1}

Sequence

Transcript Sequence

>Glyur001894s00031739.1
CTGACCAACACGCTATATATACGCCCTCACCTCCTTCCCTTTCAANATTTTAGATTCTTTTCCCCGAGATTCAGCCCCCGAGTTCCCAAGGAGAAGAAAGCAAAGTCCTTCGAGGTTAGTCTTCTTATTCTTCTGGGATTTGGGAAATTAGGGTTCATGGTTTTGTTCTCTATGAATGAATTCGAACGTGTCCTTAGTTGCATTTCAAATTGCGTCGGTTATTTTTTTGCGTTGATACAGATGGCTCGTACAAAGCAAACAGCTCGNAAGTCAACTGGTGGAAAAGCCCCTAGGAAGCAGCTTGCAACCAAGGCTGCACGTAAGTCTGCACCAACTACTGGTGGTGTGAAGAAGCCACATCGTTATCGTCCTGGTACTGTTGCTCTTCGTGAGATTAGGAAATACCAGAAGAGTACTGAGCTCCTGATCAGGAAACTTCCATTCCAGAGGTTGGTTCGTGAAATTGCTCAGGACTTCAAGACTGACCTCCGCTTCCAGAGCCATGCTGTGCTTGCATTGCAAGAAGCTGCTGAGGCATACCTTGTTGGACTCTTTGAGGACACCAACTTGTGTGCCATCCATGCTAAGCGTGTCACTATCATGCCTAAGGATATTCAGCTGGCAAGGAGGATTCGTGGTGAGCGTGCTTGAGGGTGGTGGATTTGGCACTATGCTGATGGGTGGCTGCTGATAATGTTTTGTTATTGAAACGATTAGTTGCTAGGGGAATAGGTGTTTTACCAGTAGTCTGATTAATTGTAATAGGGATATATACTGCCTATGGTTTTGTGNAGGTTGGATTTCTAGATATTGGGATGTAATTGTTCTGTAAGAGTTTCTGATATGTTAATTGTTCTCGTTTTTACTGGATGTGCAGCCACTTGGGAATTGTATTGGACAACTTTCTGTTGCCATCTAATCTAGTATAGCTAGCTTATTGTGTCCCATCTGTCTGTCTGGACTTAAAAGTCCTTTGTTTTAAATGAAAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01894	29162	30845	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0000786 nucleosome

molecular_function

GO:0003677 DNA binding

GO:0046982 protein heterodimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001894s00031739.1	PF00125.19	Histone	138	212	1.10E-32
Glyur001894s00031739.2	PF00125.19	Histone	58	132	3.60E-33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	372.699
SRR1783600	control	374.681
SRR1783602	moderate drought stress	405.187
SRR1811619	moderate drought stress	402.592

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	338.620
DRR006520	Root Summer glycyrrhizin high producing strain	335.005
DRR006521	Root Winter glycyrrhizin high producing strain	189.891
DRR006522	Root Winter glycyrrhizin high producing strain	182.924
DRR006523	Root Summer glycyrrhizin low producing strain	459.718
DRR006524	Root Summer glycyrrhizin low producing strain	460.217
DRR006525	Leaf Summer glycyrrhizin high producing strain	503.248
DRR006526	Leaf Summer glycyrrhizin high producing strain	501.676

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1143.450
SRR2868004	Drought Stress (root)	1140.510
SRR2967015	Control (root)	1027.916

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1205.425
SRR9715740	Leaf	1355.657
SRR9715741	Leaf	1366.274
SRR9715739	Root	1239.896
SRR9715742	Root	774.535
SRR9715743	Root	890.911

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	598.362
SRR8749028	MeJA induced 9h	356.813
SRR8749029	MeJA induced 9h	463.295
SRR8749030	Uninduced	371.919
SRR8749031	Uninduced	270.872
SRR8749032	Uninduced	300.440

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	944.181
SRR8400027	Control - Root	856.734