Gene detail

Gene detail information of Glyur001894s00031736.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G67580.2	4.00E-59	Homeodomain-like/winged-helix DNA-binding family protein
NR	XP_003524694.1	3.24E-157	PREDICTED: telomere repeat-binding factor 2-like isoform X1 [Glycine max]
Swissprot	tr\|Q9FJW5\|TRB2_ARATH	3.00E-77	Telomere repeat-binding factor 2
trEMBL	tr\|K7KPH5\|K7KPH5_SOYBN	1.00E-157	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G22500.2}

Sequence

Transcript Sequence

>Glyur001894s00031736.1
TGGGTATGGAAAAAATCTCAGCTGGGAGGGATGCCACCCATTAGAGGTGCCGAACAAACTCCCGCGGGAGATTAGTCCCCGTCGTATAGGCGGTGGGATACTCCTCGAAGTAGAAGCAAAAAAAAATATGTCTACGAATAAATCCTGTGAATTCAGAGAATGAATTACAAGTGCAGAATATTTTTCACGACTGAATCACCAGTTTAATCAAAAGCAGAATGAAGAAACACATTTTGTTTTCCTCGCTCGAATAGTCATTCTTTCCCCNGTGTTCCGCAAAAGCATTCGGATTAATTCGATTTATGTGCGTCTAAATACTTGAACTTTTCCCAATTCTCACCATCGCCCAGTGATTTGTCAAGTTTTCTTGTGCAAAGATGCACGTGTAGAAAAGGGAAGCACTGAAACTCTTAAGGTTTCCTCAAGATTAGAAGCTAAGACTGGACTGTCACAAAAAGCTGCGGGCTTTCCTTCAATGGGTGCTCCTAAGCAGAAATGGACTGCAGAAGAAGAAGCGGCACTGAAGGCTGGAGTAGTCAAACATGGGGCAGGAAAATGGCGCACTATACTTACAGATCCCGAGTTCAGTGCCATTTTGCGCATGCGTTCAAATGTAGATCTCAAGGATAAATGGAGGAATATAAATGTGACAGCAATATGGGGATCCCGGCAGAAGGCAAAGCTTGCCCTTAAAAGGAACCTTCCAGCCCCAAAAATTGACAACAACCATTTGGCCTTGAGTACAGTAGTTCAACGTGAAGAAGTTCTCGATGCTAAGCCCCTTGCAATTTCTGGTGGAACATTGCAATCTCCCAATTCAAAAGAACAAATATCAAGGTTGGGGGATAATCATGTATTGGAGGCTATTGTCAATATGAAAGAGTCAAAGGGTTCTGACAGAGATGCCATTGCTTCTTACATAGAGGAAAAATATCGGTGTCCACCAAACCTTAGAAAGTTACTGTCAACAAAACTGAAGCATATGGTGGCAAGTGGCAAAATAATCAAGGAAAAGCATAAGTACAAAATTATGCCAAGTTCGACAGTCTCTGAGAGAAGAAGATGCTCTTCCTTGATACTTGTGGAAGGGANGCCCAAAGATTCTCCAGAAGTGGAGAAGAGTGATGATGTCAACATACTTTCAAAATCCCAAATTGACGCGGAGCTATCAAAAGCAAAGGGCATGTCATCTCAAGAGGCGGCTGCTGCAGCTGCAAAAGCAGTTGCAGAGGCAGAAGTTGCCATTGCACAGGCAGAGGCAGCAGCTAGGGAGGCAGAGGCTGCAGAGGCTGAAGCTGAGGCTGCTCATGTGTTTGCAAAAGCAGCAATGAAGGCGCTCAAATGCAAAATGCTTCATATTTGATGGTGCGGACTTCTGCTTGTTCATCATCAGCCTGAGTTGGCTTGAGATAATAGTTCTGCCGCTGTGCTTCCTGCCTGTTTTTCATTGCTGTACATAATTTTNGGCTTGTAAATCTGGAATATGTGGGATTATTCATGAAACATTTTGTCAGGACTCAGGAGTCAGTAGTAGCTTTTATTTAACTTTCGCTTTTTATTATTTTTAAAGACAATGAGGGGAAGGCCACAAAGTACTAATGGAAGAGTGATGTAATGGAATGATCGACATTCATTCCACTTGGAGTAAATGAAACAAAACAATTTTCAGTAGTGTTTCNGATAGCAATATGGATTGTCATTGACATGCAGACCATATTTACAAGGATGCTTGTTCTAAGACATTGTTTCACTGCTGTGGCTATGCAGTATATTGACTTTTTTGTCAAAACTATATTTACAGGTAACAGACCTCATTTGTCTTTTGTGTTTTTGCCGATGAAGAAGACAGTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01894	6295	11331	-

Gene family

Gene family	subfamily
Transcription Factors Family	MYB-related

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006334 nucleosome assembly

cellular_component

GO:0000786 nucleosome

GO:0005634 nucleus

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001894s00031736.1	PF00249.26	Myb_DNA-binding	5	55	1.70E-08
Glyur001894s00031736.1	PF00538.14	Linker_histone	127	180	4.20E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	20.765
SRR1783600	control	20.742
SRR1783602	moderate drought stress	18.668
SRR1811619	moderate drought stress	18.534

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	19.062
DRR006520	Root Summer glycyrrhizin high producing strain	19.128
DRR006521	Root Winter glycyrrhizin high producing strain	7.140
DRR006522	Root Winter glycyrrhizin high producing strain	7.096
DRR006523	Root Summer glycyrrhizin low producing strain	14.990
DRR006524	Root Summer glycyrrhizin low producing strain	14.923
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.548
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.336

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.030
SRR2868004	Drought Stress (root)	17.515
SRR2967015	Control (root)	18.402

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.674
SRR9715740	Leaf	11.521
SRR9715741	Leaf	11.245
SRR9715739	Root	5.168
SRR9715742	Root	10.819
SRR9715743	Root	8.379

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	17.019
SRR8749028	MeJA induced 9h	8.336
SRR8749029	MeJA induced 9h	7.939
SRR8749030	Uninduced	7.689
SRR8749031	Uninduced	6.625
SRR8749032	Uninduced	5.927

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	27.155
SRR8400027	Control - Root	27.221