Gene detail

Gene detail information of Glyur001894s00031735

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G67570.1	Tetratricopeptide repeat (TPR)-like superfamily protein
NR	XP_004509062.1	PREDICTED: pentatricopeptide repeat-containing protein At5g67570, chloroplastic-like [Cicer arietinum]
Swissprot	tr\|Q9FJW6\|PP451_ARATH	Pentatricopeptide repeat-containing protein At5g67570, chloroplastic (Precursor)
trEMBL	tr\|G7JE27\|G7JE27_MEDTR	PPR containing plant-like protein {ECO:0000313\|EMBL:AES90728.1}

Sequence

Transcript Sequence

>Glyur001894s00031735.1
TTCGGGACCAAAAATGCNATTTTATTCGAAAAATATCTTTTGGTTGCCGCCGGCGCTCAGCCATCATATTTATCTTGTAACCACNATGCGGTATCTGAATTCTGAAACCTCCACGCTTCCCATAACACTGGGCGTTGGCCATGGAAGCTCTGCAAGTGCAGGGGCACACTTTCTCTCTTCGCCCCGTGTCCCAATTCCAACCAGACACCGACAAAATCCGACGCAACCTAATTCAAAAGGGTGTCCATCCTACCCCGAAGATCGTCCACACCATCCGCAAGAAACAAATCCAAAAACACAACCGCAAACTGAATCGCCANGCCCAACAGTCCCCTCCTCCACTCTCCCACTCCCAAAGGCAAGCCCTGGAGGAAGAACAACACTTCCAGGAACTAAAACACGAATACAAGCAATTCACGAGAGCACTGGAAGCAAATGATGAAGTGGGTGAGGGTTTTCCTCCAATGGTGGGGAAGAAGCCATGGGAGGGGATTCAAAAGGCCGAGTTTTTGGAGCGGACGAGGGCCAACAAGGAGTACGGAGGAGGAAAGCTCAGGAGGGAGAGCTTGAAGGAGCTGAGGGAAATGCTCCAAGCCCGAAAGATGGATGAGTTGAAGTGGGTCTTCGACGACGACCTCGAAGTCAACGAGAATTGGTTCAATGAGAGTAGCTACGGGGTAGGGAAGAAGAAGACTCGCGAACGCAGCGAGGCTCAGGTTATAAGGTTTCTCGTTGATAGGCTGAGTGATAGGGAGATTACGACCAAGGATTGGAAGGTATCGAGGTTAATGAAGCTGTCGGGATTGCCATTCACCGAGGGTCAGTTGTTGATGATTCTTCAAATGCTTGGTGTTAAGGGTTGTTGGAAGCAAGCTCTTTCTGTGGTCCACTGGGTCTACAATTGTAAGGATCACAGGAAGTGTCAAAGCAGAACCGGGAAAAAGGAGAAAAGAGTAGAACAGGTTTGGAACACTCTGCTGGGGCAACATTCTGGACATGTTCTTGGGAAGGCAAGAAGGCCAAAGGAAGCTCTTCAAATTTTCAGTTTGATGCGTGGAAATATCCATGTATATCCTGATATGGCTGCATATCACAGCATTGCTGTTACACTTGGTCAAGCTGGTCTTCTGAAAGAGTTGATGAATATTGTCGAATGCATGAGGCAGAAACCCAAAACATTTAAATCTATGCATCGCAAGAACTGGGATCCAGTTCTTGAGCCTGATGTGGTTATATATAATTCTGTACTTAATGCTTGTGTTCCNTCCAAGCAATGGAAAGCCGTGTCATGGGTTTTTAATCAACTGAGTAAAAGTGGTCTGAAACCTAATGGAGCAACTTATGGACTTGCAATGGAGGTAATGCTGCAATCGGGCAACTATGACCTTGTCCATGAGTTATTTGGAAAGACAAGGAGAAGTGGGGAAGTTCCAGATGTCCTTACATATAAAGTGCTGGTGAGAACTTTTTGGAAGGAAGGTAAAATTGATGAAGCTGTGGAAGCTGTCAGGGACATGGAAAGAAGAGGAACTATGGGAACAGCCAGTGTATATTACGAGCTAGCGTGTTGCCTTTGCAACTGTGGGAGATGGCAAGATGCCATTCCAGAGGTTGAGAAGATTAGAAGACTTCCTCATGCTAGGCCTTTGGAGGTTACTTTCACTGGCATGATTAAGTCATCCATGGATGGTGGACATATTGATGATTGCTTTTGTATATTTGAATACGTGAAAGACCACTGTGCTCCTAACATAGGGACCATAAATACCATGCTGAAAGTTTACGGCCGCAATGATATGTTCTCTAAAGCTAAAGTTTTATTTGAGGAAGTTAAGGTAGCCAAATCAGATTCTTATGCCATCCCAGAGGGTGGTAGTAGCTCTGTTGTACCAGATGCGTACACGTATAACTCAATGTTGGAAGTATCTGCTAGTGCACACCAGTGGGAATANTTTGAGCATGTGTACAGAGAGATGATTCTCTCAGGTTATCATTTGGATCAAAACAAAAACTTGTCATTACTTGTTAAATCTTCAAGAGCTGGCAAGTTGCATTTACTGGAGCATGCATTTGACATGATTCTNGAAGCTGGAGAAATTCCACACTATCTTTTCTTTTTTGAATTGCTGATTCAAGCGATAGCTCAACATAATTATGAGCGAGCCGTCATCTTAGTCAGCACCATGGCTTATGCGCCATACCGAGTGACAGAAAAGCAATGGACAGACCTTTTTAAGGAAAATAAAGACAGAATCAGTCATGGACATCTGGAACGGTTGTTGGATGCTCTTGGTAATTGTGATGTTGTATCAGAAGCAACAGTCTCAAATTTATCAAGATCATTGCATGTTCTTTGTGGATTAGGTACATCGAGAAACATCTCTAGTATTATCCCTTTTGGAAGTGAAANTACTGTCAATAGTCTGAATGAGGGAATTGATGATGGTGGAAATGGAAATGTGCCAAGTATTTCAGGGAGAATGATGATTGAATGTGCTGAATCTGGGAATGACATTCTTGTTGGGAGTAACCAAGCTGAACTGGATACATTTACCTTTAACCATGATCAAGTTGACAGAGGAAACAGTAATGATGTCATGGTTTGCAGGCCACAAAACTGTGATATTGAAGATAGATTAAGTTTATGCGCTGATAAGCTGGAATTTCCTGACGATGGGGCACTTGAGAAGTCTTGTGATAATTCACATGAGGAGTTTTGGGATGATGGCAGTTCTGAAGATGATGATGATGATGATGATGATGATGATGAGGGAGTGAGTGACAAGCCCTCAGCATATGAAATATTGGATGCATGGAAGGAAATGAGAAAGGAGGATAGGAGTTTGTTAGACTTGGAACTTGTTTGTGACTAGTGTTTGAAAGTTGCTTTAGTGTTCAATATACTAGCTGAATAGGGAAAGGAAATTGTAACAAATAACAAGGGTCATCGTAAATTAGCTTATTTTGATCAACTTTGTGATATTTGAAACGTTGTTGTAATTGGAAAAAGTGGACCCAACT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01894	126	5444	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001894s00031735.1	PF01535.15	PPR	287	306	0.98
Glyur001894s00031735.1	PF13041.1	PPR_2	361	402	2.40E-07
Glyur001894s00031735.1	PF01535.15	PPR	435	463	0.0078
Glyur001894s00031735.1	PF01535.15	PPR	542	565	0.0086
Glyur001894s00031735.1	PF13812.1	PPR_3	587	616	0.033

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.120
SRR1783600	control	9.207
SRR1783602	moderate drought stress	14.278
SRR1811619	moderate drought stress	14.009

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.427
DRR006520	Root Summer glycyrrhizin high producing strain	11.311
DRR006521	Root Winter glycyrrhizin high producing strain	40.114
DRR006522	Root Winter glycyrrhizin high producing strain	39.224
DRR006523	Root Summer glycyrrhizin low producing strain	12.989
DRR006524	Root Summer glycyrrhizin low producing strain	12.773
DRR006525	Leaf Summer glycyrrhizin high producing strain	26.885
DRR006526	Leaf Summer glycyrrhizin high producing strain	26.904

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.083
SRR2868004	Drought Stress (root)	10.190
SRR2967015	Control (root)	17.072

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.718
SRR9715740	Leaf	11.157
SRR9715741	Leaf	12.569
SRR9715739	Root	0.652
SRR9715742	Root	6.859
SRR9715743	Root	5.773

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.990
SRR8749028	MeJA induced 9h	8.140
SRR8749029	MeJA induced 9h	6.021
SRR8749030	Uninduced	10.498
SRR8749031	Uninduced	11.304
SRR8749032	Uninduced	7.509

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.315
SRR8400027	Control - Root	12.296