Gene detail information of Glyur001892s00041941 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G77700.1 | 7.00E-98 | Pathogenesis-related thaumatin superfamily protein |
| NR | XP_003543788.1 | 1.18E-171 | PREDICTED: pathogenesis-related protein 5-like [Glycine max] |
| Swissprot | tr|P28493|PR5_ARATH | 6.00E-75 | Pathogenesis-related protein 5 (Precursor) |
| trEMBL | tr|K7LX39|K7LX39_SOYBN | 4.00E-172 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G02680.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01892 | 47289 | 50397 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001892s00041941.1 | PF00314.12 | Thaumatin | 35 | 240 | 2.90E-78 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.120 |
| SRR1783600 | control | 3.199 |
| SRR1783602 | moderate drought stress | 2.879 |
| SRR1811619 | moderate drought stress | 2.823 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.916 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.967 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.492 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.962 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.265 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.147 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 20.415 |
| SRR2868004 | Drought Stress (root) | 20.616 |
| SRR2967015 | Control (root) | 19.329 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.394 |
| SRR9715740 | Leaf | 0.424 |
| SRR9715741 | Leaf | 1.682 |
| SRR9715739 | Root | 4.433 |
| SRR9715742 | Root | 12.467 |
| SRR9715743 | Root | 10.421 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.111 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.404 |
| SRR8749030 | Uninduced | 0.294 |
| SRR8749031 | Uninduced | 0.370 |
| SRR8749032 | Uninduced | 0.419 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.905 |
| SRR8400027 | Control - Root | 5.993 |