Gene detail

Gene detail information of Glyur001891s00034425

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G07270.1	5.00E-162	GTP cyclohydrolase I
NR	XP_007140677.1	0	hypothetical protein PHAVU_008G132600g [Phaseolus vulgaris]
COG	YP_007056784.1	1.00E-37	GTP cyclohydrolase I [Rivularia sp. PCC 7116]
Swissprot	tr\|Q8VYU3\|GCH1_SOLLC	0	GTP cyclohydrolase 1 {ECO:0000305}
trEMBL	tr\|V7B893\|V7B893_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW12671.1}

Sequence

Transcript Sequence

>Glyur001891s00034425.1
ACAATCGAATCCAAACCAAACCAACCAACAACACCAACTCAACTCACTGCACCGCACCACAGCAACCCCTTTCAATTCTCCATTCCTTTTCTCTTGGCCCCTCTCTCTCTCTCTCTCTCTCTCTCTTCTATTATTTATTCGTTGGTTGGTTATTCTTTTTCCGACACACCGATCTCTGTGACCCTTTTGCATTTTCCCTCTCCCCTCCTTATTGTTTAACACGTGATTNGTGATTTTAAGAATTGGGTCGTTCTTAATTTTTTGGTCTTGCTATTGAGATCTTGCTTGTTGTTCTGTTCGACCCCTCGTTTGTTTTTGGGGTGCATGCATGTCACTGTTTTGAAGATTTGGTTCTGTTGTTGGAAAGTTGAGATTTTTGGGACATTGGAAAGGTGGGATTTGTTGGTATTTCAATGGGCTGTTTGGATGANGGGCGTTTCAGTGTTGAGCTTGAAAATGGAGTGAGCATTGGTTGTGATGAAGTGGGTTTAGGGAAAGAGGGGAATGATGCTACTGCCATTGAAGATGCTGTGAAGNTTTTGTTGCTGGGTCTTGGGGAAGACATAAACAGAGAAGGTCTTAGAAAGACACCACTTCGTGTTGCAAAGGCCCTTCGTGAAGGAACCAGAGGTTACAGGCAAAAGGTGAAGGACATTGTTCAAGGCGCTTTATTCCCCGAAGCCNGTCTAGATAATAGAGTTGGTCATGCAGGTGGAGCAGGCGGACTCGTGATTGTCAGAGATCTTGACTTGTTTTCCTATTGTGAGTCCTGCTTGCTTCCGTTCCAGGTCAAGTGTCATGTGGGCTATGTTCCTTCTGGTGAAAGAGTTGTNGGTTTAAGCAAGCTCTCTCGTGCTGCTGATGTATTTGCGAAACGACTCCAAGAGCCTCAGCGTCTGGCAAACGAAGTGTGTTCTGCTTTGCATCAGGGAATAAAGCCAGCAGGTGTTGCCATCATACTTCAATGTACACACATCCACTTTCCAGACATAGNGTCAGTCTTTCTCGACTCGAACCACCAAGGATGGGTGAAGATACTTGTTTCCTCCGGTTCNGGGGTTTTTGAAAACAAAAATGCAGATTTATGGGCTGATTTCTTCAGTCTTCTTAAATTTAGAGGTATCAATGTTGAAAAAATCCATTGTAGAGGATCATCTGACCCATGCTGGTGTCCTTCTCACTCTTCTCTTTCTGCCAAAGCTTCCTCTAAAATCGGACCGGCCAATCCCGCAATGGTCACCGCAGTTTCTTCAATTATTAAATCTCTGGGAGAAGATCCATTGAGGAAGGAGCTTAGAGGGACTCCAAGTAGATTTGTGAAATGGTTGATGAACTTTCAGAACAGTAACTTCAACATGAAGCTGAATGGCGCCGACAACAAGGAGGTAAACTCGAACGACAAAAAAGTACACGCTGAGCTGAACTTACCCTTTTGGTCACAATGTGAGCATCATTTACTTCCATTTCATGGTGTCGTTCACATAGGGTACCTCACGTCTGACGGATCGAATCCAATCGGAAAACCTCTTTTACAGTCCATAGTGCATTTTTACGGCTTCAAGCTCCAAGTTCAGGAAAGGCTTACCAGGCAGATAGCTGAAACCATTTCCCCACTGTTAGGTGGAGATGTGATAGTAGTTGTAGAGGCAAGCCACACATGTATGATTTCTCGGGGTATTGAGAAGTTTGGAAGTAGTACAGCTACCATTGCTGTGTTAGGGCNGTTTTCGACCGACATGGCCACAAGGGCTTCCTTCTTGCAGGGNATTCCAAGTCCTACATCATCTTCTTCTGGAGAGCAATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01891	25559	30155	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01495	GCH1, folE	EC:3.5.4.16	Folate biosynthesis	map00790

Gene Ontology

biological_process
GO:0046654 tetrahydrofolate biosynthetic process

cellular_component
GO:0005737 cytoplasm

molecular_function
GO:0003934 GTP cyclohydrolase I activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001891s00034425.1	PF01227.17	GTP_cyclohydroI	36	188	5.10E-35
Glyur001891s00034425.1	PF01227.17	GTP_cyclohydroI	276	452	2.10E-39

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.217
SRR1783600	control	1.271
SRR1783602	moderate drought stress	0.554
SRR1811619	moderate drought stress	0.525

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.462
DRR006520	Root Summer glycyrrhizin high producing strain	2.736
DRR006521	Root Winter glycyrrhizin high producing strain	0.304
DRR006522	Root Winter glycyrrhizin high producing strain	0.249
DRR006523	Root Summer glycyrrhizin low producing strain	5.877
DRR006524	Root Summer glycyrrhizin low producing strain	5.064
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.156
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.719

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.494
SRR2868004	Drought Stress (root)	8.895
SRR2967015	Control (root)	7.077

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.880
SRR9715740	Leaf	7.483
SRR9715741	Leaf	4.696
SRR9715739	Root	2.567
SRR9715742	Root	1.101
SRR9715743	Root	1.300

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.743
SRR8749028	MeJA induced 9h	2.735
SRR8749029	MeJA induced 9h	2.588
SRR8749030	Uninduced	2.391
SRR8749031	Uninduced	0.802
SRR8749032	Uninduced	1.237

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.418
SRR8400027	Control - Root	10.089