Gene detail

Gene detail information of Glyur001891s00034424

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G13030.1	4.00E-46	P-loop containing nucleoside triphosphate hydrolases superfamily protein
NR	XP_004492277.1	1.52E-172	PREDICTED: uncharacterized protein LOC101507360 isoform X2 [Cicer arietinum]
trEMBL	tr\|G7L060\|G7L060_MEDTR	3.00E-169	ATP-binding protein, putative {ECO:0000313\|EMBL:AES79089.2}

Sequence

Transcript Sequence

>Glyur001891s00034424.1
GGTGAAGTTGTCGCCTTCTTCACTTCAAAACCATTGAATAGAATAGGAGAACGAACGCACGCAAAGGCACTTAAGCAAACCAACATCATCATCATCATCATCATGGGTGGTGGCTGTGATTCCACTGTTTCTGATGGTACATGTGAAGAAGATTATTGTTCGGAGGAGGATTCTCCCTTGCTTTCTTCTCACTCCCTTTCACCTGCTCTCAGGGATAATCTGGGTTTGCAGGATGAAGACAATAGTGTGAATGNGGATAATGGGTTTTATTTTGTAAAAGTTGAAGTCTGTGAAAGTACANAGTCTTCTTCTGCATTTGATTTTGAAGTCAGTGAAAGACAGAGGCTTAGCATCTACCAAGAAATCCTTCAAAGTTATGATGAATCGAAGATTGATAGCAAGAATTTGAAAGAAGCAAAAGAAAAAATCTTTAGCTACAGGCCCGGAGCATGGATTGAGAAGGTTGGGGGCTTGAAGTTATGTGATTATGATGTACCTGAGACAACATGCCTCATATTGGTTGGCCCAAGTGGATCTGGGAAAAGTAGTCTCATAAATAGAATCTCTAAGGTGTTCGAGGATGACAAATTTGCACCCGTGAGAGCACAAGTATCATACAACTATATAGGGGATGGAACATACTTCCTCCGAGAGTATATGATTCCAAGAAACTCAAACTCTATCTGTCTGTACGATACACGTGGTTTGTCAGATCATTCTCTCAACAATGAGAATAATAGAATGCTGAAGAATTGGATGACGAAAGGCGTTCGTCATGGAGAGCCTGTTGTCAGGGATACAGATAATCAGAGATTGAGGAAAAGTTTGAAGCATAAAGGTTACAAGAAAGGTTTCTTTTCCAGTAAAAGCAGAAAAGTTAATTTTGTAATATACGTCGTTAACGGTCTTTCGGTTCTGAATGAAATGGAGAATACTGGTGCTTTGGAGACAGAGTATATTGAAACAATTGTTTCTACTTTCAATTGCCCATTCCTGTCATTTAAAGACTGTGATGATCTAGTGACTGAATCTGCCATNATTGGGATGTTACGGTATGGTCTTGAGCATGCTGACAGAAATATTCCTCAGAAAAACAAGGTTATGGATAAGGTTCANAAAATATATATGTCAGTATGCATGATTTTGTTAATACTAGGAATAGCAGTTGTCATTGCCTTGGCTCAAAATAAGTTCATGCACCAGTATCATGCCCCTCCACAGCAGCAAGGTTGTAGCAAAAAATTTCATGTCCCACATCCACAACTGAAAGTTCCNAAGGCTCCTAAGGTTCCTAAGATGCAACCTAAGATAGAGTGGCATAAAATTAGGCACATATGGTAGNTGTGAAATACTGATATGGCTTGTATATAGTGTTCATATAATAACCTGATGAGATAGCTGAGGAAACTAGTAATTTGGAAGTACTTGGTTTAGGTGATCTATCGTTGGCAACACTTAGTATGTGAGTGATCTATCGTTTTTGTTCCTTGGAATGGTAACTCTGTACATGGTTGAAATTCAATGTGGAAATAATCTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01891	14662	19550	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003924 GTPase activity

GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001891s00034424.1	PF03193.11	DUF258	169	251	1.60E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	23.831
SRR1783600	control	23.666
SRR1783602	moderate drought stress	23.134
SRR1811619	moderate drought stress	22.918

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	19.715
DRR006520	Root Summer glycyrrhizin high producing strain	20.470
DRR006521	Root Winter glycyrrhizin high producing strain	12.306
DRR006522	Root Winter glycyrrhizin high producing strain	11.888
DRR006523	Root Summer glycyrrhizin low producing strain	19.977
DRR006524	Root Summer glycyrrhizin low producing strain	18.887
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.668
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.728

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.410
SRR2868004	Drought Stress (root)	26.491
SRR2967015	Control (root)	25.513

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.606
SRR9715740	Leaf	13.817
SRR9715741	Leaf	16.711
SRR9715739	Root	4.562
SRR9715742	Root	14.885
SRR9715743	Root	15.001

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.691
SRR8749028	MeJA induced 9h	12.853
SRR8749029	MeJA induced 9h	11.729
SRR8749030	Uninduced	9.753
SRR8749031	Uninduced	9.515
SRR8749032	Uninduced	11.443

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	30.574
SRR8400027	Control - Root	32.676