Gene detail

Gene detail information of Glyur001891s00034422

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G13010.1	2.00E-135	Oxidoreductase, zinc-binding dehydrogenase family protein
NR	XP_004492275.1	0	PREDICTED: putative quinone-oxidoreductase homolog, chloroplastic-like [Cicer arietinum]
COG	YP_007059253.1	9.00E-63	Zn-dependent oxidoreductase [Rivularia sp. PCC 7116]
Swissprot	tr\|Q9SV68\|QORH_ARATH	2.00E-176	Putative quinone-oxidoreductase homolog, chloroplastic
trEMBL	tr\|I1KZ26\|I1KZ26_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G46150.1}

Sequence

Transcript Sequence

>Glyur001891s00034422.1
AATTTATTTATTTCATTATCTTTTTTCTCTCTGTCTCTCTCCTGTCTCGGTGTTCACCCACATTCTCAAATCACTCCTTTCTAGTTTCTTTGCAAATTAAGTGGACATGGGGAGGCTCATGCATGCGGTTCAGTACGATGGCTATGGTGGAGGACCTGCTGCCTTAAAGCATGTTGAAGTTCCCTTACCTACTCCAAATAAAGATGAGGTTTTGGTTAAATTGGAAGCAGCTAGTATAAATCCATTTGATTGGAAAGTACAGAAGGGCATGTTGAGGCCAATTTTGCCTCGCATGTTCCCATATATACCTGGAACTGATGTAGCAGGAGAAGTCATAGAGGTTGGTCAAGGTGTCAAAAAGTTCAAACCTGGTGACAAAGTTGTAGGCATGGTTAACCCCTTTACTGGTGGAGGAGCACTAGCCGAGTTTGCTGTTGTTAAGGAGAGTCTGGCTGCTTCAAGACCACCAGAAGTTTCGGCATCTGACTGCGCTGGCTTACCTGTTGCCGGTCTCACAGCTCTCCAGGCACTCTCCCAATCCATAGGGATCAAGCTTGATGGAAGCGGCGAAAGGAAAAACATCCTGATCACTGCTGCATCGGGTGGTGTAGGTCACTATGCAGTTCAATTGGCAAAGCTAGGTAACACCCATGTGACAGCCACCTGTGGTGCTCGCAACATCGAGTTTGTCAAGAGCTTAGGGGCTGATGAGGTAATTGACTACAAGACTCCAGAAGGTGCTGCTTTGAAGAGTCCATCCGGTAAGAAATATGACGGAGTGGTCCACTGCGCGGTGGGCTTTCCGTGGTCCACCTTTGAGCCTAACTTGAGCATGAATGGGAAGGTTGTAGACATAACTCCTAGCCCTAGTGCAATGATGACATTTGCTTTGAAGAAACTTACCTTCTCCAAGAAACAACTTGTGCCTTTGCTTTTGCTTCCAAAGGGTGAGGACCTTCAGTATCTTGTTGATTTGGTCAAGGAAGGAAAGCTTAGAACAGTTATAGACTCTAAATATCCCCTATCCAAGGCTGAAGATGCCTGGGCTAAGAGCATTGATGGTCATGCAACTGGGAAGATAGTTTTTGAGTTCTAGATGTGCATAATAAGTGCTCCATAAACTATATACACTACATTGTATGAAGAGTTTAATAACTATGCACTGACAGCGTAAAAAGATTTTACATCCAATCATATCTCACCATAATGCCACCTAATAATATTACTTCCTAAATTATCTGCACAAATATCTAAATGGTTAGATATGATTGGATGTCCAAGTAAAACTTTTCACATTGTCATTGCATAGTAATTAAATCCTTATATAAATCGCTTGAGGAGTGCCTTGTAGTTTTACTTTGGTATGACATGAGTCACATGATTTGTTGTGTCCCTAGATACCATAAACAAATGAATTGATCTCAATCTATTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01891	7051	10919	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0008270 zinc ion binding

GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001891s00034422.1	PF08240.7	ADH_N	33	95	1.90E-11
Glyur001891s00034422.1	PF13602.1	ADH_zinc_N_2	198	326	2.50E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.026
SRR1811619	moderate drought stress	0.026

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.077
DRR006522	Root Winter glycyrrhizin high producing strain	0.075
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.598
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.518

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.070
SRR2868004	Drought Stress (root)	1.109
SRR2967015	Control (root)	0.624

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.216
SRR9715740	Leaf	24.566
SRR9715741	Leaf	8.151
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.128

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.178
SRR8749028	MeJA induced 9h	0.047
SRR8749029	MeJA induced 9h	0.212
SRR8749030	Uninduced	0.088
SRR8749031	Uninduced	0.214
SRR8749032	Uninduced	0.078

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.226
SRR8400027	Control - Root	0.132